Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

✭ 107

python mri registration preprocessing enhancement brain fsl ants skull-stripping brain-segmentation bias-field-correction

AD Prediction

Alzheimer's Disease Prediction by using ResNet, AlexNet

✭ 118

python deep-learning prediction cnn alexnet transfer-learning mri-images brain alzheimer-disease-prediction

kaggle brain-tumor-3D

Predict the status of a genetic biomarker important for brain cancer treatment

✭ 20

Jupyter Notebook python image-classification brain radiology 3d

syncopy

Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

✭ 19

python analysis neuroscience computational-neuroscience brain ecog spectral-methods systems-neuroscience

HumanPilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

✭ 22

HTML analysis human rstats biorxiv brain 10xgenomics spatial-transcriptomics visium dlpfc

neuralBlack

A Multi-Class Brain Tumor Classifier using Convolutional Neural Network with 99% Accuracy achieved by applying the method of Transfer Learning using Python and Pytorch Deep Learning Framework

bg-atlasapi

A lightweight python module to interact with atlases for systems neuroscience

✭ 54

Jupyter Notebook python visualisation neuroscience registration microscopy brain atlases

brainfuck

Brainfuck interpreter companion to the brain programming language

✭ 32

rust shell brainfuck brain brainfuck-interpreter

threeBrain

3D Visualization of Brain MRI

✭ 29

javascript r localization neuroimaging electroencephalography brain ecog ieeg template-brains mri-brain

DeepHyperNEAT

A public python implementation of the DeepHyperNEAT system for evolving neural networks. Developed by Felix Sosa and Kenneth Stanley. See paper here: https://eplex.cs.ucf.edu/papers/sosa_ugrad_report18.pdf

✭ 42

python evolution neat genetic-algorithm neuroevolution artificial-intelligence neural-networks brain evolutionary-computation hyperneat evolutuonary-algorithms deephyperneat

MIRACL

Multi-modal Image Registration And Connectivity anaLysis

✭ 23

python shell ImageJ Macro network neuroscience mri connectivity neuroimaging image-segmentation brain image-registration biomedical clarity atlases

ANTsR

Advanced Normalization Tools in R

✭ 101

r C++statistical-learning prediction mri registration decomposition segmentation brain

prime-re.github.io

Open resource exchange platform for non-human primate neuroimaging

✭ 13

HTML Jupyter Notebook CSS pipelines mri brain nhp atlases brainweb

neurosky-android-sdk

Android SDK for the NeuroSky MindWave Mobile Brainwave Sensing Headset

✭ 39

java kotlin android sdk rxjava eeg rxandroid neurosky bci brain brain-computer-interface mindwave rxkotlin thinkgear

PyRhO

A virtual optogenetics laboratory

✭ 30

python AMPL shell Jupyter Notebook Dockerfile neuroscience computational-neuroscience neuron brain jupyter-widget optogenetics opsin brian2 brainweb

hnn

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

brain-monitor

A terminal app written in Node.js to monitor brain signals in real-time

✭ 119

javascript nodejs signal-processing eeg terminal-app brain terminal-graphics eeg-headset epoc-headset

ColeAnticevicNetPartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

✭ 48

c matlab shell python Makefile neuroscience connectivity neuroimaging network-partitions brain brain-imaging

NEURON-UI

NEURON User Interface

✭ 14

AMPL python C++PHP c SourcePawn neural-network neuroscience neuron brain

Brain-Segmentation

Brain Segmentation on MRBrains18

✭ 37

python keras segmentation brain brain-imaging unet-image-segmentation mri-segmentation

brainreg

Automated 3D brain registration with support for multiple species and atlases.

✭ 73

python neuroscience registration microscopy brain neuroanatomy atlases

MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

BRAINSTools

A suite of tools for medical image processing focused on brain analysis

✭ 94

C++python CMake Jupyter Notebook TeX matlab image cmake registration classification segmentation classifications brain namic

connectomemapper3

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

✭ 45

HTML python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv

Pyllusion

A Parametric Framework to Generate Visual Illusions using Python

✭ 35

python TeX generate neuroscience perception reality brain optical-illusion visual-illusion autostereogram illusion mindblowing zollner ebbinghaus visual-illusions delboeuf ponzo

pybv

A lightweight I/O utility for the BrainVision data format, written in Python.

✭ 18

python Makefile data eeg vision products brain ieeg brainvision brainproducts vhdr vmrk

1-45 of 45 brain projects