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Top 36 computational-biology open source projects

bistro
A library to build and execute typed scientific workflows
pyqms
pyQms, generalized, fast and accurate mass spectrometry data quantification
DEcode
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
ECLAIR
Robust and scalable inference of cell lineages from gene expression data.
regulatory-prediction
Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology
myokit
Myokit: A simple interface to cardiac cellular electrophysiology
EscherConverter
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
msk-STAPLE
STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.
cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
vargeno
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
STing
Ultrafast sequence typing and gene detection from NGS raw reads
Jupyter Dock
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
1-36 of 36 computational-biology projects