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Top 18 cwl open source projects

A new open source tool to run CWL workflows on LSF

✭ 34

java Common Workflow Language javascript shell workflow lsf cwl

The CWL v1.0 user guide

✭ 20

HTML python Common Workflow Language SCSS CSS r workflow cwl workflows

REANA: Reusable research data analysis platform

✭ 86

python shell Smarty kubernetes reproducible-research containers cwl research-data reproducible-workflows reusable-science

A language server for Common Workflow Language

✭ 50

python typescript shell editor workflow language-server ide cwl cwl-documents

WDL and CWL compiler for the DNAnexus platform

✭ 15

scala wdl Common Workflow Language python shell Makefile compiler cwl dnanexus

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

✭ 61

python HTML shell docker aws bioinformatics snakemake aws-lambda pipelines conda cwl aws-step-function wdl-workflow cwl-workflow snakemake-workflow

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

✭ 29

go shell Dockerfile TeX Common Workflow Language wdl docker aws workflow bioinformatics workflow-engine gcp docker-machine batch-job cwl etl-framework wdl-workflow cwl-workflow

Typescript data model for Common Workflow Language

✭ 42

typescript Common Workflow Language javascript shell workflow cwl

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

✭ 28

Common Workflow Language python shell Dockerfile rnaseq cwl virus-detection

emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

✭ 38

python Nextflow Common Workflow Language shell Dockerfile r ruby workflow pipeline viruses cwl

IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.

✭ 15

python Jupyter Notebook docker jupyter jupyter-notebook cwl

Create cwl workflows by writing a simple Python script

✭ 40

python Common Workflow Language workflow cwl

CWL tools and workflows for GGR

✭ 20

Common Workflow Language python Jinja shell dnase-seq rna-seq chip-seq atac-seq cwl

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

✭ 35

python Jupyter Notebook shell workflow cwl workflow-description-language

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

✭ 16

wdl Dockerfile python shell workflow bioinformatics genomics workflow-engine computational-biology next-generation-sequencing cwl workflows cromwell wdl-workflow cwl-workflow bioinformatics-workflows stjudecloud

tool-registry-service-schemas

APIs for discovering genomics tools, their metadata and their containers

✭ 27

shell javascript api workflow tool ga4gh cwl

Our VM/Docker sharing infrastructure and management component

✭ 99

java wdl Nextflow Common Workflow Language scala shell docker workflow bioinformatics containers cwl dockstore

[Experimental] Workflow Definition Language (WDL) to CWL

✭ 26

python Common Workflow Language wdl cwl commonwl wdl-workflow

1-18 of 18 cwl projects