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Top 8 kmer open source projects

De novo genome assembly and multisample variant calling

✭ 105

c Makefile perl python r shell genomics variant-calling kmer cortex genome-analysis genome-assembly de-bruijn-graphs genome-graph contigs

Predict plasmids from uncorrected long read data

✭ 27

python TeX Dockerfile bioinformatics research nanopore genomics pathogen bioinformatics-pipeline pacbio global-health kmer oxford-nanopore plasmid infectious-diseases long-reads uncorrected plasmidfinder

Toolkit for k-mer with taxonomic information

✭ 46

go shell set union intersection kmer k-mer difference unique unik

Classify sequencing reads using MinHash.

✭ 42

C++HTML python bioinformatics nanopore openmp mutations minhash kmer

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

✭ 16

python javascript Vue HTML genetic-algorithm fasta kmer codon-usage

Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

✭ 21

C++Makefile minhash locality-sensitive-hashing kmer

Fast k-mer based tool for multi locus sequence typing (MLST)

✭ 33

python shell bioinformatics mlst kmer bacterial-database fastq-files bacterial-genomes applied-bioinformatics-lab

Ultrafast sequence typing and gene detection from NGS raw reads

✭ 15

C++c javascript HTML CMake r genomics ngs computational-biology databases dna genes mlst kmer ngs-analysis cgmlst

1-8 of 8 kmer projects