Top 17 metabolomics open source projects

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

CoreMS is a comprehensive mass spectrometry software framework

In silico chemical library engine for high-accuracy chemical property prediction

Compare different differential abundance and expression methods

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

Quantitative features for mass spectrometry data

Public Workflows at GNPS

pyQms, generalized, fast and accurate mass spectrometry data quantification

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Documentation for GNPS and related tools as written in mkdocs

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

No description or website provided.

LC-MS data processing tool for large-scale metabolomics experiments.