Top 138 neuroscience open source projects

A toolbox for integrated information theory.

A publicly-editable collection of open computational neuroscience resources

Brain Imaging Analysis Kit

Visualizer for large-scale and interactive ray-tracing of neurons

A list of schools and researchers in computational neuroscience

Mother of All BCI Benchmarks

CS198-96: Intro to Neurotechnology @ UC Berkeley

Generate custom Docker and Singularity images, and minimize existing containers

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

a python based software for visualization of neuroanatomical and morphological data.

Brain Modeling Toolkit

Distributed, Versioned, Image-oriented Dataservice

Graphical experiment builder for the social sciences

A multi-purpose GPU-accelerated open-source suite for brain data visualization

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

Parameterizing neural power spectra into periodic & aperiodic components.

cell detection in calcium imaging recordings

Fast spike sorting with drift correction for up to a thousand channels

Blue Brain Python Optimisation Library

EntroPy: complexity of time-series in Python (DEPRECATED)

NEURON Simulator

Collaborative Annotation Toolkit for Massive Amounts of Image Data

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

python implementations of Analyzing Neural Time Series Textbook

An R package for experimental psychologists

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

MNE-CPP: A Framework for Electrophysiology

Deep Learning with Tensor Flow for EEG MNE Epoch Objects

Connectome Workbench

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Biologically-realistic recurrent convolutional neural networks

Inner ear models for Python

A fullstack javascript app for capturing and visualizing OpenBCI EEG data

Nengo interactive visualizer

A multi-dimensional embedding algorithm

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

A Python interface for ABF files

Fast and scalable spike sorting in python

PyTorch Connectomics: segmentation toolbox for EM connectomics

Real-time position tracker for behavioral research

Temporal Network Tools

For running psychology and neuroscience experiments

A motor unit based model of skeletal muscle and fatigue

The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

Automated mouse atlas propagation

A curated list of awesome neuroscience libraries, software and any content related to the domain.

A Python library for creating and simulating large-scale brain models

Brian is a free, open source simulator for spiking neural networks.

The MATLAB toolbox for MEG, EEG and iEEG analysis

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.

EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.