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Top 9 protein-protein-interaction open source projects
mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
✭ 50
Jupyter Notebook
machine-learning
big-data
binder
apache-spark
jupyter
hackathon
protein-data-bank
jupyter-notebook
pyspark
workshop-materials
3d-visualization
protein-protein-interaction
protein-ligand-interactions
FunFolDesData
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
✭ 15
scala
shell
structural-biology
protein-structure
publication-data
rosetta
protein-design
protein-protein-interaction
functional-protein-design
oncoEnrichR
Cancer-dedicated gene set interpretation
✭ 35
r
TeX
cancer
proteins
disease-gene-association
tcga-data
crispr-target
protein-protein-interaction
co-expression
report-generator
prioritization
genesets
high-throughput-screening
cancer-survival
functional-enrichment-analysis
pathway-enrichment-analysis
protein-complexes
tissue-enrichment-analysis
cancer-hallmark-evidence
lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
✭ 110
c
python
bioinformatics
chemistry
structural-biology
molecular-structures
protein-structure
artificial-intelligence
dna
protein
proteomics
docking
peptides
molecular-biology
protein-design
protein-protein-interaction
swarm-intelligence
structural-bioinformatics
protein-dna-interactions
bioinformatics-tool
glowworm-swarm-optimization
protein-docking
MEGADOCK
An ultra-high-performance protein-protein docking for heterogeneous supercomputers
✭ 28
C++
Cuda
bioinformatics
gpu
cuda
fftw
protein-protein-interaction
contact map
Contact map analysis for biomolecules; based on MDTraj
✭ 27
python
shell
bioinformatics
molecular-dynamics
computational-biology
biochemistry
protein-protein-interaction
protein-ligand-interactions
deeprank
Deep learning framework for data mining protein-protein interactions using CNN
✭ 99
python
pytorch
docking
protein-protein-interaction
3d-cnn
mmtf-spark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
✭ 20
java
machine-learning
big-data
apache-spark
protein-data-bank
protein-structure
scientific-computing
protein-sequences
protein-protein-interaction
protein-ligand-interactions
haddocking.github.io
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
✭ 14
HTML
Jupyter Notebook
education
research
structural-biology
modeling
software
protein-protein-interaction
structural-bioinformatics
integrative-modeling
utrecht-university
1-9
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9
protein-protein-interaction projects