nPYc-ToolboxThe nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
runcharterAutomating run chart analysis for faceted displays of data across multiple metrics or locations
picardmetrics🚦 Run Picard on BAM files and collate 90 metrics into one file.
visualqcVisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
NanoRNanopore data analysis in R
DigitalCellSorterDigital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
ataqvA toolkit for QC and visualization of ATAC-seq results.
mrivismedical image visualization library and development toolkit
lighthouse-keeperThis package is no longer under active development. We recommend using Lighthouse CI. CLI tool for running Google’s Lighthouse checks
kneaddataQuality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
MRQyMRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
mpvQClibmpv based application for quality control of videos
PTXQCA Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
cacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
aibolitStatic Analyzer for Java Code with Machine Learning in Mind
mzQCReporting and exchange format for mass spectrometry quality control data