Top 260 science open source projects

📝 An awesome Data Science repository to learn and apply for real world problems.

A leading-edge control system for quantum information experiments

Repository for the Astropy core package

Qt Visual Graph Editor

Ten simple rules for better figures

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

📖 Huge curated collection (archive) of links of Tech, Science, Economics, Politics, Life, Philosophy, Conferences, Videos and much more resources from everyday surfing. ⭐️ Since October 21, 2017.

Common Workflow Language reference implementation

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows and macOS. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.

✨ Standard library for JavaScript and Node.js. ✨

List of Science courses with video lectures

🔬 Assemble large genomes using short reads

Minimal metadata schemas for science software and code, in JSON-LD

An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

Software for writing protocols and running them on the Opentrons OT-2

This repository has now moved to GitLab.com/openflexure/openflexure-microscope

Generate custom Docker and Singularity images, and minimize existing containers

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

🌀 ⚡️ 🌍 TextRank (automatic text summarization) for PHP8

Python to the people

Tools for loading standard data sets in machine learning

🐳📊📚 Docker Images tracking the stable Galaxy releases.

Tutorials for the Astropy Project

Singularity: Application containers for Linux

Curated (meta)list of resources for Biology.

A repository for setting up a RNAseq workflow

GSTools - A geostatistical toolbox: random fields, variogram estimation, covariance models, kriging and much more

💿 Free software that works great, and also happens to be open-source Python.

🎓 Tidy tools for academics

A curated, public list collecting resources for biomechanics and human motion: datasets, processing tools, software for simulation, educational videos, lectures, etc.

Scientific One-Liner Interactive GUI Library

A blog made with django designed like a scientific paper written in Latex.

Design-of-experiment (DOE) generator for science, engineering, and statistics

Online research made easy

Scientific code needs to be open source and peer reviewed

Rucio - Scientific Data Management

[MIRROR] Gentoo Science Overlay

A curated list of awesome scientific Python resources

Landgreen's public site: physics notes, n-gon

Deep Learning for Astronomers with Tensorflow

HyPhy: Hypothesis testing using Phylogenies

A list of computer-science readings I recommend

🔬 A repository of resources related to citizen, community-based and/or non-institutional science

A list of resources on how/why to do a PhD

Downloads pdfs via a DOI number, article title or a bibtex file, using the database of libgen(sci-hub) , arxiv

Powerful, efficient particle trajectory analysis in scientific Python.

Periodic elements data

A Python interface to the 6S Radiative Transfer Model

NGLess: NGS with less work

UGENE is free open-source cross-platform bioinformatics software

TARDIS - Temperature And Radiative Diffusion In Supernovae

the official website for jortSorting

Python wrappers for SymEngine

Science-based games - a collaborative list

Mirror of the Sage source tree -- please do not submit PRs here -- everything must be submitted via https://trac.sagemath.org/

GromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools (v4.6.x, v5.x, 2016.x, 2018.x, 2019.x, all with the same Python code) into python scripts.

An open-source internal ballistics simulator for rocket motor experimenters

Ember front-end for the Open Science Framework

A collection of scripts and notes related to genomics and bioinformatics