All Projects → theislab → Anndata

theislab / Anndata

Licence: bsd-3-clause
Annotated data.

Programming Languages

python
139335 projects - #7 most used programming language

Projects that are alternatives of or similar to Anndata

Dash
Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.
Stars: ✭ 15,592 (+9018.13%)
Mutual labels:  data-science, bioinformatics
Dash Cytoscape
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Stars: ✭ 309 (+80.7%)
Mutual labels:  data-science, bioinformatics
Deep Rules
Ten Quick Tips for Deep Learning in Biology
Stars: ✭ 179 (+4.68%)
Mutual labels:  data-science, bioinformatics
Getting Started With Genomics Tools And Resources
Unix, R and python tools for genomics and data science
Stars: ✭ 587 (+243.27%)
Mutual labels:  data-science, bioinformatics
Scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Stars: ✭ 858 (+401.75%)
Mutual labels:  data-science, bioinformatics
Terpene Profile Parser For Cannabis Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
Stars: ✭ 63 (-63.16%)
Mutual labels:  data-science, bioinformatics
Dash.jl
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
Stars: ✭ 248 (+45.03%)
Mutual labels:  data-science, bioinformatics
Tiledb Vcf
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Stars: ✭ 26 (-84.8%)
Mutual labels:  data-science, bioinformatics
Pretzel
Javascript full-stack framework for Big Data visualisation and analysis
Stars: ✭ 26 (-84.8%)
Mutual labels:  data-science, bioinformatics
Workshop
课题组每周研讨会
Stars: ✭ 28 (-83.63%)
Mutual labels:  data-science, bioinformatics
Oswitch
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
Stars: ✭ 75 (-56.14%)
Mutual labels:  data-science, bioinformatics
Matplotplusplus
Matplot++: A C++ Graphics Library for Data Visualization 📊🗾
Stars: ✭ 2,433 (+1322.81%)
Mutual labels:  data-science
Fixy
Amacımız Türkçe NLP literatüründeki birçok farklı sorunu bir arada çözebilen, eşsiz yaklaşımlar öne süren ve literatürdeki çalışmaların eksiklerini gideren open source bir yazım destekleyicisi/denetleyicisi oluşturmak. Kullanıcıların yazdıkları metinlerdeki yazım yanlışlarını derin öğrenme yaklaşımıyla çözüp aynı zamanda metinlerde anlamsal analizi de gerçekleştirerek bu bağlamda ortaya çıkan yanlışları da fark edip düzeltebilmek.
Stars: ✭ 165 (-3.51%)
Mutual labels:  data-science
Biosyntax
Syntax highlighting for computational biology
Stars: ✭ 164 (-4.09%)
Mutual labels:  bioinformatics
Competition Baseline
数据科学竞赛知识、代码、思路
Stars: ✭ 2,553 (+1392.98%)
Mutual labels:  data-science
Jaxnet
Concise deep learning for JAX
Stars: ✭ 171 (+0%)
Mutual labels:  data-science
Airbyte
Airbyte is an open-source EL(T) platform that helps you replicate your data in your warehouses, lakes and databases.
Stars: ✭ 4,919 (+2776.61%)
Mutual labels:  data-science
Learnpythonforresearch
This repository provides everything you need to get started with Python for (social science) research.
Stars: ✭ 163 (-4.68%)
Mutual labels:  data-science
Sweetie Data
This repo contains logstash of various honeypots
Stars: ✭ 163 (-4.68%)
Mutual labels:  data-science
Awesome Ai
A curated list of artificial intelligence resources (Courses, Tools, App, Open Source Project)
Stars: ✭ 161 (-5.85%)
Mutual labels:  data-science

|Stars| |PyPI| |PyPIDownloadsTotal| |PyPIDownloadsMonth| |Conda| |Docs| |Build Status| |Coverage|

.. |Stars| image:: https://img.shields.io/github/stars/theislab/anndata?logo=GitHub&color=yellow :target: https://github.com/theislab/anndata/stargazers .. |PyPI| image:: https://img.shields.io/pypi/v/anndata.svg :target: https://pypi.org/project/anndata .. |PyPIDownloadsTotal| image:: https://pepy.tech/badge/anndata :target: https://pepy.tech/project/anndata .. |PyPIDownloadsMonth| image:: https://img.shields.io/pypi/dm/scanpy?logo=PyPI&color=blue :target: https://pypi.org/project/anndata .. |Conda| image:: https://img.shields.io/conda/vn/conda-forge/anndata.svg :target: https://anaconda.org/conda-forge/anndata .. |Docs| image:: https://readthedocs.com/projects/icb-anndata/badge/?version=latest :target: https://anndata.readthedocs.io .. |Build Status| image:: https://travis-ci.org/theislab/anndata.svg?branch=master :target: https://travis-ci.org/theislab/anndata .. |Coverage| image:: https://api.codacy.com/project/badge/Coverage/b92ae35b691141ceb5f2ee74beaf39d3 :target: https://www.codacy.com/manual/theislab/anndata

anndata - Annotated Data

AnnData provides a scalable way of keeping track of data and learned annotations.

  • Read the documentation <https://anndata.readthedocs.io>_.
  • Install via pip install anndata or conda install anndata -c conda-forge.

.. would be nice to have http://falexwolf.de/img/scanpy/anndata.svg also on GitHub, but it’s much too wide there; .. GitHub doesn’t plan to resolve scaling images: https://github.com/github/markup/issues/295

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].