Scaff10XPipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
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Mutual labels: bioinformatics, genomics, genome
GenometoolsGenomeTools genome analysis system.
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Mutual labels: bioinformatics, genomics, genome
DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
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Mutual labels: bioinformatics, genomics, genome
catchA package for designing compact and comprehensive capture probe sets.
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Mutual labels: bioinformatics, genomics, genome
companionThis repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
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Mutual labels: bioinformatics, genomics, genome
PygenoPersonalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Mutual labels: bioinformatics, genomics, genome
GenomeAnalysisModuleWelcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
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Mutual labels: bioinformatics, genomics, genome
GatkOfficial code repository for GATK versions 4 and up
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Mutual labels: bioinformatics, genomics, genome
Masurca Stars: ✭ 128 (-30.43%)
Mutual labels: bioinformatics, genome
Hts Nimnim wrapper for htslib for parsing genomics data files
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Mutual labels: bioinformatics, genomics
RoaryRapid large-scale prokaryote pan genome analysis
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Mutual labels: bioinformatics, genomics
Somalierfast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
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Mutual labels: bioinformatics, genomics
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
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Mutual labels: bioinformatics, genomics
OctopusBayesian haplotype-based mutation calling
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Mutual labels: bioinformatics, genomics
Kmer CntCode examples of fast and simple k-mer counters for tutorial purposes
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Mutual labels: bioinformatics, genomics
ArtemisArtemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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Mutual labels: bioinformatics, genomics
HgvsPython library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Mutual labels: bioinformatics, genomics
CirclatorA tool to circularize genome assemblies
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Mutual labels: bioinformatics, genomics
HifiasmHifiasm: a haplotype-resolved assembler for accurate Hifi reads
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Mutual labels: bioinformatics, genomics
Goleftgoleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
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Mutual labels: bioinformatics, genomics