samtools / Bcftools
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This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
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This is the official development repository for BCFtools. It contains all the vcf* commands which previously lived in the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and the samtools BCF calling from bcftools subdirectory of samtools.
For a full documentation, see bcftools GitHub page.
Other useful links:
File format specifications live on HTS-spec GitHub page htslib samtools tabix
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