GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → biocore → Emperor

biocore / Emperor

Licence: other
Emperor a tool for the analysis and visualization of large microbial ecology datasets

Programming Languages

javascript
184084 projects - #8 most used programming language
python
139335 projects - #7 most used programming language

Labels

visualizationbioinformatics

Projects that are alternatives of or similar to Emperor

Sv Callers
Snakemake-based workflow for detecting structural variants in WGS data
Stars: ✭ 28 (-45.1%)
Mutual labels:  bioinformatics
Locuszoom Standalone
Create regional association plots from GWAS or meta-analysis
Stars: ✭ 35 (-31.37%)
Mutual labels:  bioinformatics
Verifybamid
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Stars: ✭ 44 (-13.73%)
Mutual labels:  bioinformatics
Protr
Comprehensive toolkit for generating various numerical features of protein sequences
Stars: ✭ 30 (-41.18%)
Mutual labels:  bioinformatics
Genevalidator
GeneValidator: Identify problems with predicted genes
Stars: ✭ 34 (-33.33%)
Mutual labels:  bioinformatics
Migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (-25.49%)
Mutual labels:  bioinformatics
Workshop
课题组每周研讨会
Stars: ✭ 28 (-45.1%)
Mutual labels:  bioinformatics
Dram
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Stars: ✭ 47 (-7.84%)
Mutual labels:  bioinformatics
Etrf
Exact Tandem Repeat Finder (not a TRF replacement)
Stars: ✭ 35 (-31.37%)
Mutual labels:  bioinformatics
Awesome Vdj
Tools and databases for analyzing HLA and VDJ genes.
Stars: ✭ 43 (-15.69%)
Mutual labels:  bioinformatics
Fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Stars: ✭ 966 (+1794.12%)
Mutual labels:  bioinformatics
Bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Stars: ✭ 970 (+1801.96%)
Mutual labels:  bioinformatics
Gatk
Official code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+1864.71%)
Mutual labels:  bioinformatics
Cytometry Clustering Comparison
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
Stars: ✭ 30 (-41.18%)
Mutual labels:  bioinformatics
Liger
Lightweight Iterative Gene set Enrichment in R
Stars: ✭ 44 (-13.73%)
Mutual labels:  bioinformatics
Rasusa
Randomly subsample sequencing reads to a specified coverage
Stars: ✭ 28 (-45.1%)
Mutual labels:  bioinformatics
Uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Stars: ✭ 38 (-25.49%)
Mutual labels:  bioinformatics
Yacrd
Yet Another Chimeric Read Detector
Stars: ✭ 49 (-3.92%)
Mutual labels:  bioinformatics
Sns
Analysis pipelines for sequencing data
Stars: ✭ 43 (-15.69%)
Mutual labels:  bioinformatics
Singlecellhaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Stars: ✭ 41 (-19.61%)
Mutual labels:  bioinformatics
View All Similar Projects ➔

Emperor

Join the chat at https://gitter.im/biocore/emperor Coverage Status

Emperor is a next-generation tool for the analysis and visualization of large microbial ecology datasets. Amongst its many features, Emperor provides a modern user interface that can be rapidly adjusted to your data analysis workflow.

To start using Emperor, please refer to the installation notes.

Before contributing code to Emperor, please familiarize yourself with the contributing guidelines.

Usage

You can start using Emperor through QIIME 2's interfaces (the command line or the graphical user interface), or alternatively using the Python interface (compatible with the Jupyter notebook, see this example). For more details, refer to our online documentation.

Publications

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].