kipoi / Models
Licence: mit
Model zoo for genomics
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Kipoi models
This repository hosts predictive models for genomics and serves as a model source for Kipoi. Each folder containing model.yaml is considered to be a single model.
Contributing models
- Install kipoi:
pip install kipoi
-
Run
kipoi ls. This will checkout thekipoi/modelsrepo to~/.kipoi/models) -
Follow the instructions on contributing/Getting started.
Using models (to predict, score variants, build new models)
To explore available models, visit http://kipoi.org/models. See kipoi/README.md and docs/using getting started for more information on how to programatically access the models from this repository using CLI, python or R.
Configuring local storage location
This model source (https://github.com/kipoi/models) is included in the Kipoi config file (~/.kipoi/config.yaml) by default:
# ~/.kipoi/config.yaml
model_sources:
kipoi:
type: git-lfs
remote_url: [email protected]:kipoi/models.git
local_path: ~/.kipoi/models/
auto_update: True
If you wish to keep the models stored elsewhere, edit the local_path accordingly.
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].