All Projects → phenotips → open-pedigree

phenotips / open-pedigree

Licence: LGPL-2.1 license
A free and open-source pedigree tool by PhenoTips®

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Open Pedigree logo

Build status LGPL-2.1

A free and open-source pedigree tool powered by PhenoTips®

Open Pedigree is a robust browser-based genomic pedigree drawing solution using Prototype, Raphaël, and PhenoTips.

image

Features

Robust support for complex families, intergenerational linkages, and consanguinity

Shade nodes with disorders and/or candidate genes

Quickly start with family templates

Automatic consanguinity detection

Import from PED, LINKAGE, GEDCOM (Cyrillic), BOADICEA, or GA4GH Pedigree (FHIR)

Getting started

Command line

Quickly get started with open pedigree on your computer:

git clone [email protected]:phenotips/open-pedigree.git
cd open-pedigree
npm install
npm start

Open a browser to http://localhost:9000/

Docker

You can also use the supplied Docker image to run the applicarion. To get started:

git clone [email protected]:phenotips/open-pedigree.git
cd open-pedigree
docker build . -t open-pedigree
docker run -p 9000:9000 -d open-pedigree

Contributing

Contributions welcome! Fork the repository and create a pull request to share your improvements with the community.

In order to ensure that the licensing is clear and stays open, you'll be asked to sign a CLA with your first pull request.

Support

This is free software! Create an issue in GitHub to ask others for help, or try fixing the issue yourself and then make a pull request to contribute it back to the core.

If you are interested in the Enterprise/commercial version, please contact PhenoTips.

License

Copyright (c) 2019-2022 Gene42 Inc. o/a PhenoTips

Open Pedigree is distributed under the LGPL-2.1 (GNU Lesser General Public License).

You can easily comply with this license by:

  • including prominent notice of the use of Open Pedigree in your software
  • retaining all copyright notices in the software
  • ensuring that any and all changes you make to the software are published and open-sourced under the LGPL
Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].