twz915 / Pubmed
Licence: mit
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
Stars: ✭ 15
Programming Languages
python
139335 projects - #7 most used programming language
Projects that are alternatives of or similar to Pubmed
Jrnl
Collect your thoughts and notes without leaving the command line.
Stars: ✭ 5,126 (+34073.33%)
Mutual labels: journal
Py2rs
A quick reference guide for the Pythonista in the process of becoming a Rustacean
Stars: ✭ 690 (+4500%)
Mutual labels: reference
Scala Pet Store
An implementation of the java pet store using FP techniques in scala
Stars: ✭ 812 (+5313.33%)
Mutual labels: reference
React
Cheatsheets for experienced React developers getting started with TypeScript
Stars: ✭ 30,444 (+202860%)
Mutual labels: reference
Friends
Spend time with the people you care about. Introvert-tested. Extrovert-approved.
Stars: ✭ 737 (+4813.33%)
Mutual labels: journal
Sol Journal
✎ Simple, personal journaling progressive web app
Stars: ✭ 470 (+3033.33%)
Mutual labels: journal
Remark Defsplit
plugin to change links and images to references with separate definitions
Stars: ✭ 7 (-53.33%)
Mutual labels: reference
Html Reference
HTML Reference: a free guide to all HTML5 elements and attributes
Stars: ✭ 673 (+4386.67%)
Mutual labels: reference
Site
🎓 Rust Programming Language Tutorials for Everyone!
Stars: ✭ 786 (+5140%)
Mutual labels: reference
Rescience
The ReScience journal. Reproducible Science is Good. Replicated Science is better.
Stars: ✭ 634 (+4126.67%)
Mutual labels: journal
Patterns
A catalogue of Rust design patterns, anti-patterns and idioms
Stars: ✭ 5,495 (+36533.33%)
Mutual labels: reference
Rticles
LaTeX Journal Article Templates for R Markdown
Stars: ✭ 895 (+5866.67%)
Mutual labels: journal
Pure Bash Bible
📖 A collection of pure bash alternatives to external processes.
Stars: ✭ 28,109 (+187293.33%)
Mutual labels: reference
Remark Reference Links
plugin to transform links and images into references and definitions
Stars: ✭ 8 (-46.67%)
Mutual labels: reference
pubmed is used to:
-
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
-
Read csv file downloaded from pubmed search page.
Install
pip install pubmed
Usage
Query Online
from pubmed import PubMed
# http://www.ncbi.nlm.nih.gov/pubmed/26471457
pm = PubMed(26471457)
print pm.title
print pm.authors
print pm.pub_date
print pm.journal_name
print pm.journal_full_name
or
print pm.get_title()
print pm.get_authors()
print pm.get_pub_date()
print pm.get_journal_name()
print pm.get_journal_full_name()
or
print pm.getTitle()
print pm.getAuthors()
print pm.getPubDate()
print pm.getJournalName()
print pm.getJournalFullName()
Read Download File
read csv files download from pubmed
from pubmed import OpenCsv
f = OpenCsv('./pubmed_result.csv')
for p in f:
print(p.title)
print(p.authors)
print(p.PMID)
demo
>>> pm = PubMed(26471457)
>>> pm.authors
['Tu W', 'Zhang H', 'Liu J', 'Hu QN']
>>> pm.title
'BioSynther: a customized biosynthetic potential explorer.'
>>> pm.pub_date
'2016 Feb 1'
>>>
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].