SleepECG
SleepECG provides tools for sleep stage classification when EEG signals are not available. Based only on ECG (and to a lesser extent also movement data), SleepECG provides functions for
- downloading and reading open polysomnography datasets,
- detecting heartbeats from ECG signals, and
- classifying sleep stages (which includes the complete preprocessing, feature extraction, and classification pipeline).
Documentation
Documentation for SleepECG is available on Read the Docs.
Installation
SleepECG is available on PyPI and can be installed with pip:
pip install sleepecg
Alternatively, install via conda:
conda install -c conda-forge sleepecg
Optional dependencies provide additional features if installed:
- joblib≥1.0.0 (parallelized feature extraction)
- matplotlib≥3.4.0 (plot hypnograms and confusion matrices)
- mne≥0.23.0 (read data from MESA, SHHS)
- numba≥0.53.0 (JIT-compiled heartbeat detector)
- pandas≥1.2.0 (read data from GUDB)
- tensorflow≥2.7.0 (sleep stage classification with keras models)
- wfdb≥3.3.0 (read data from SLPDB, MITDB, LTDB)
All optional dependencies can be installed with
pip install sleepecg[full]
Contributing
The contributing guide contains detailed instructions on how to contribute to SleepECG.