This repository contains a molecular epidemiological report on COVID-19 produced by ViReport using data obtained from the GISAID database. This analysis was done using all sequences longer than 28,000 bases. As new sequences are added to the database (and as ViReport itself updates), this repository will also update.
- You can access the most up-to-date Markdown version of the report here: Report.md
- You can access the input sample dates here: input_files
- I was unable to include the raw sequences due to restrictions from GISAID's terms of agreement
- I can, however, share the FASTA upon request if given proof of ownership of a GISAID account
- You can access the output files from the analyses here: output_files
- You can access all intermediate files from the analyses here: intermediate_files
Note that this is still using a very early version of ViReport, so the aesthetics of the report will improve significantly in the next few weeks.