585 Open source projects that are alternatives of or similar to dnaPipeTE

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Extensive de-novo TE Annotator

A curated collection of publicly available resources on how companies around the world practice DevOps

💻 Copy YouTube annotations like a pro!

No description or website provided.

An example of how to run a Golang project in Docker in a Buildkite pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Precision HLA typing from next-generation sequencing data

🔬 De novo assembly of nanopore reads using nextflow

A MongoDB implementation of the W3C Web Annotation Protocol

Towhee is a framework that is dedicated to making neural data processing pipelines simple and fast.

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Pytorch Implementation of GoEmotions 😍😢😱

cs2pr - Annotate a GitHub Pull Request based on a Checkstyle XML-report within your GitHub Action

CrowdTruth framework for crowdsourcing ground truth for training & evaluation of AI systems

Continuous Integration Platform

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

tfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.

Transformers Pipeline with KoELECTRA

A pure bash clojureish CI pipeline

This module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.

A lightweight, distributed workflow system

General serializer for PHP. An alternative to JmsSerializer.

Automatic Swagger docs for Go

Project to set up basics of a Java annotation processor

A W3C and OA compliant Web Annotation server

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

Spring boot starter for gRPC framework with JWT authorization

✔️ㅤ[ARTICLE] Writing your own Annotation Processors in Android

FreeCAD - flamingo workbench

No description or website provided.

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

Proposal for a method to create trails using the Web Annotation Data Model

Catalyst.Classification

Helper for dealing with secrets in kubernetes.

Use AutoAI to detect fraud

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

Node & Express Demo App for Azure DevOps

Make it possible to chain regular functions

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

Old specification for Hack pipes in JavaScript. Please go to the new specification.

Use this tool to label forms, bounding boxes, and assigning types to annotations

Lightweight data loading and caching library for android

Official implementation of "Towards Good Practices for Efficiently Annotating Large-Scale Image Classification Datasets" (CVPR2021)

[not-WIP] Update values in terraform.tfvars using annotations

The Rx Asset Management System for motion picture production

API spec validator and OpenAPI document generator for Python web frameworks.

List of IARC bioinformatics nextflow pipelines

Swarm CI - Docker Swarm-based CI system or enhancement to existing systems.

Google Classroom Data Pipeline

💡👀 Read EPUB books with built-in insights from wikis, definitions, translations, and Google.

RNA-seq analysis pipeline for detection gene-fusions

Rubocop Linter Action: A GitHub Action to run Rubocop against your code!

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Simple and flexible ML workflow engine

A lightweight data processing framework for Apache Spark

Fun functional programming with pipelinable functions