30 Open source projects that are alternatives of or similar to dorothea

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Representation and manipulation of genomic intervals

2019秋季学期泛函分析笔记QAQ🦄

This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"

Fast visualization tool for large-scale and high dimensional single-cell data

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Inference of switch-like differential expression along single-cell trajectories

Make rapid visualizations of RNA-seq data in R

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Interactive R package to quantify, analyse and visualise alternative splicing

characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

📊 Gene expression in neuroexpresso database

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

GREIN : GEO RNA-seq Experiments Interactive Navigator

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Transcripts annotation and GO enrichment Fisher tests

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Differential Gene Correlation Analysis

TCGA data acquisition and processing for Project Cognoma

Spatial alignment of single cell transcriptomic data.

Purely-functional, coordinate-free linear algebra

Foundation of vector-like and list-like containers in Bioconductor

SummarizedExperiment container

Copy number calling and variant classification using targeted short read sequencing

A unified framework for working transparently with on-disk and in-memory array-like datasets

Bioconductor package for management of multi-assay data