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golang-docker-exampleAn example of how to run a Golang project in Docker in a Buildkite pipeline
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dnaPipeTEdnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
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rurality开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程,一切想到的,想不到的,应有尽有
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get phylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches
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rnafusionRNA-seq analysis pipeline for detection gene-fusions
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nanoflow🔬 De novo assembly of nanopore reads using nextflow
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TILToday I Learned
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metagrafmetaGraf is a opinionated specification for describing a software component and what its requirements are from the runtime environment. The mg command, turns metaGraf specifications into Kubernetes resources, supporting CI, CD and GitOps software delivery.
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nwabap-ui5uploaderThis module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.
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antiutilsTypeScript/JavaScript utilities for those who don't like utilities
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mydataharbor🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步,主要定位是为实时交易系统服务,亦可用于大数据的数据同步(ETL领域)。
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etlM-Lab ingestion pipeline
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proposal-hack-pipesOld specification for Hack pipes in JavaScript. Please go to the new specification.
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sfpowerscriptsA build system for modular development in Salesforce, delivered as a sfdx plugin that can be implemented in any CI/CD system of choice
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TDAstatsR pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
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sparklanesA lightweight data processing framework for Apache Spark
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hlatypingPrecision HLA typing from next-generation sequencing data
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RamsesThe Rx Asset Management System for motion picture production
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tailseekerSoftware for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
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effepiFun functional programming with pipelinable functions
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bifrostA stream processing framework for high-throughput applications.
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NGI-RNAseqNextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
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fire-cloud基于Spring Cloud的微服务业务框架
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kubecryptHelper for dealing with secrets in kubernetes.
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CreditAn example project that predicts risk of credit card default using a Logistic Regression classifier and a 30,000 sample dataset.
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pipe-traitMake it possible to chain regular functions
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lineageGenerate beautiful documentation for your data pipelines in markdown format
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gunpowderA library to facilitate machine learning on multi-dimensional images.
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biojupiesAutomated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
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MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
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howtheydevopsA curated collection of publicly available resources on how companies around the world practice DevOps
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companionThis repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
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katana-skipperSimple and flexible ML workflow engine
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TOGGLEToolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
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spot-termination-exporterPrometheus spot instance exporter to monitor AWS instance termination with Hollowtrees
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tfatfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.
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linesA pure bash clojureish CI pipeline
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only-pipeA non-intrusive Python pipeline.
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flamingoFreeCAD - flamingo workbench
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skippaSciKIt-learn Pipeline in PAndas
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proseA python framework to process FITS images. Built for Astronomy.
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bash-streams-handbook💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.
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bacannotGeneric but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
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