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All Projects → bio2bel → bio2bel

bio2bel / bio2bel

Licence: MIT license
A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

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python
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Labels

data-integrationontologiesbiological-expression-language

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Bio2BEL Build Status Coverage Status Documentation Status zenodo

Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety of schemata into the unified framework of the Biological Expression Language [1].

Two important places to look:

Installation Current version on PyPI Stable Supported Python Versions MIT License

Download the latest stable code from PyPI with:

$ python -m pip install bio2bel

or get the latest from GitHub with:

$ git clone https://github.com/bio2bel/bio2bel.git
$ cd bio2bel
$ python -m pip install -e .

or check the installation instructions.

Citation

If you find Bio2BEL useful for your work, please consider citing:

[1]Hoyt, C. T., et al. (2019). Integration of Structured Biological Data Sources using Biological Expression Language. bioRxiv, 631812.
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