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Top 16 ontologies open source projects

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

✭ 34

Jupyter Notebook python shell machine-learning bioinformatics rna-seq computational-biology ontologies cell-type-classification single-cell-rna-seq cell-biology cell-type

PheKnowLator

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

✭ 74

python Jupyter Notebook semantic-web owl knowledge-graph benchmarks ontologies linked-open-data mechanisms biomedical-applications translational-research obofoundry biolink-model bioregistry

biolink-api

API for linked biological knowledge

✭ 54

python Gherkin perl shell Makefile Dockerfile api bioinformatics gene swagger ontologies phenotypes model-organisms

solr-ontology-tagger

Automatic tagging and analysis of documents in an Apache Solr index for faceted search by RDF(S) Ontologies & SKOS thesauri

✭ 36

python solr rdf tagging thesaurus ontology faceted-search tagger ontologies skos

obo-relations

RO is an ontology of relations for use with biological ontologies

✭ 63

HTML Makefile perl shell owl knowledge-graph ontologies relations bfo obofoundry obo-relations

ontologies

Work in progress to design data models for UK Parliament

✭ 45

HTML TSQL ontologies

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

✭ 32

python HTML bioinformatics obo ontologies obofoundry bioregistry biopragmatics

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

✭ 16

python data-integration ontologies biological-expression-language

IAO

information artifact ontology

✭ 51

common lisp perl java Makefile NewLisp shell ontologies obofoundry

phenol

phenol: Phenotype ontology library

✭ 15

java genomics ontologies phenotypes monarchinitiative phenomics human-phenotype-ontology mammalian-phenotype-ontology

nxontology

NetworkX-based Python library for representing ontologies

✭ 45

python graphs similarity networkx networks semantic-similarity ontologies digraph information-content intrinsic-similarity

teaching

Teaching material relevant to KGs

✭ 61

semantic-web knowledge-graph ontologies

Food-Categories-Classification

This repository contains the dataset and the source code for the classification of food categories from meal images.

✭ 48

python deep-learning image-classification food-classification mhealth ontologies ehealth food-dataset food-tracker dietary multilabel-model food-categories

linguistics problems

Natural language processing in examples and games

✭ 23

Jupyter Notebook python nlp machine-learning natural-language-processing language-modeling linguistics computational-linguistics ontologies natural-language-understanding

CommonCoreOntologies

The Common Core Ontology Repository holds the current released version of the Common Core Ontology suite.

✭ 109

semantics interoperability data-integration ontologies owl-ontology bfo cco applied-ontology semantic-consistency ontology-suite

tributech-catalog-api

Tributech Catalog - Create and manage your DTDL models using our graphical interface and store them using our APIs.

✭ 15

typescript SCSS HTML vocabulary ontologies graphical-user-interface tributech model-builder digital-twin dtdl digital-twins fair-code

1-16 of 16 ontologies projects