CAMI-challenge / Camisim
Licence: apache-2.0
CAMISIM: Simulating metagenomes and microbial communities
Stars: ✭ 62
Programming Languages
python
139335 projects - #7 most used programming language
Labels
Projects that are alternatives of or similar to Camisim
Qtorch
qTorch (Quantum Tensor Contraction Handler) https://arxiv.org/abs/1709.03636 -> for quantum simulation using tensor networks
Stars: ✭ 43 (-30.65%)
Mutual labels: simulation
Cloudsimsdn
CloudSimSDN is an SDN extension of CloudSim project to simulate SDN and SFC features in the context of a cloud data center.
Stars: ✭ 51 (-17.74%)
Mutual labels: simulation
Pgdrive
PGDrive: an open-ended driving simulator with infinite scenes from procedural generation
Stars: ✭ 60 (-3.23%)
Mutual labels: simulation
Plankton
Open source simulator for maritime robotics researchers
Stars: ✭ 51 (-17.74%)
Mutual labels: simulation
Costar stack
Integrated ROS capabilities for planning, predicate inference, gripper control, and perception for use with the KUKA LBR IIWA and Universal Robots.
Stars: ✭ 61 (-1.61%)
Mutual labels: simulation
Kmnsim
Koszek-Matyja Network Simulator. Specify network architecture in a simple configuration file and run network simulations.
Stars: ✭ 59 (-4.84%)
Mutual labels: simulation
Evolve
Artificial Life Simulator Originally Authored by Ken Stauffer
Stars: ✭ 47 (-24.19%)
Mutual labels: simulation
Sdformat
Simulation Description Format (SDFormat) parser and description files.
Stars: ✭ 51 (-17.74%)
Mutual labels: simulation
Lammps
Public development project of the LAMMPS MD software package
Stars: ✭ 1,019 (+1543.55%)
Mutual labels: simulation
Robots
Collection of quadrupedal robots configured to work in CHAMP development framework
Stars: ✭ 59 (-4.84%)
Mutual labels: simulation
Bullet3
Bullet Physics SDK: real-time collision detection and multi-physics simulation for VR, games, visual effects, robotics, machine learning etc.
Stars: ✭ 8,714 (+13954.84%)
Mutual labels: simulation
Stashline
A long term personal finance planning timeline app for IOS
Stars: ✭ 61 (-1.61%)
Mutual labels: simulation
Mpm
Simulating on GPU using Material Point Method and rendering.
Stars: ✭ 61 (-1.61%)
Mutual labels: simulation
Ascent
A fast and flexible C++ simulation engine and differential equation solver.
Stars: ✭ 56 (-9.68%)
Mutual labels: simulation
CAMISIM
CAMISIM is a software to model abundance distributions of microbial communities and to simulate corresponding shotgun metagenome datasets. It was mainly developed for the Critical Assessment of Metagenome Annotation (CAMI) challenge, but should be suitable for general use. Please don't hesitate to open a new issue if you run into problems or need help.
Documentation
Citation
If you use CAMISIM, please cite the publication at Microbiome:
- Fritz*, Hofmann*, et al. (2019). CAMISIM: Simulating metagenomes and microbial communities. Microbiome, 2019, 7:17. doi:10.1186/s40168-019-0633-6
A part of CAMISIM's functionality was also described in the CAMI manuscript, thus you may also cite:
- Sczyrba*, Hofmann*, Belmann*, et al. (2017). Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software. Nature Methods, 14, 11:1063–1071. doi:10.1038/nmeth.4458
Note that the project description data, including the texts, logos, images, and/or trademarks,
for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at [email protected].