Genome-scale metabolic model reconstruction with CarveMe
CarveMe is a python-based tool for genome-scale metabolic model reconstruction.
Documentation
For more details please check: http://carveme.readthedocs.io/
Installation
Can be easily installed using pip:
pip install carveme
Additionally, you must install diamond and CPLEX (please check the documentation for details).
Credits and License
For citation purposes please refer to our paper:
D. Machado et al, "Fast automated reconstruction of genome-scale metabolic models for microbial species and communities", Nucleic Acids Research, gky537, 2018. doi: https://doi.org/10.1093/nar/gky537
Developed at:
- European Molecular Biology Laboratory (2017-2019).
- Norwegian University of Science and Technology (Since 2020)
CarveMe is now an official service of ELIXIR Norway.
