Top 6 metabolism open source projects

Visualizing and Analyzing Metabolic Networks with Reaction Pattern Recognition

framed: a metabolic modeling package for python

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

EMBL GEMs: A collection of GEnome-scale Models for bacterial species

Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)

CarveMe: genome-scale metabolic model reconstruction