COVID-19 - Datasets, APIs and List of Projects.

The vision of developing this repository is to have an exhaustive list of high quality datasets, API's and projects pertaining to COVID-19 which will be open to communities such as academia, research and education.

If you have an awesome dataset, API link or a project link related to COVID-19 and would like to share it with us. Please have a look at our how to contribute page.

DATASETS

TABULAR DATA

COVID-19 Statistics Datasets:

• Data on COVID-19 (coronavirus) by Our World in Data (OWID)
• Confirmed positive cases of COVID-19 in Ontario
• British Columbia COVID-19 cases dataset
• COVID-19 in India dataset (contains ageGroup, hostipal beds and state level details on testing)
• NYtimes Excess Deaths during the Coronavirus Pandemic
• Colombia COVID-19 Official Dataset
• ECDC-COVID-19-dataset
• Johns Hopkins University - COVID-19 Data Repository
• Manitoba COVID-19 Daily Cases by Status Dataset
• Yahoo - COVID-19 dataset
• Austria COVID-19 Case Data with Basemap (STC)
• Russia COVID-19 Case Data with Basemap (STC)
• Italy COVID-19 Case Data with Basemap (STC)
• Brazil COVID-19 Case Data with Basemap (STC)
• COVID-19 in Japan Dataset
• COVID-19 in Ghana Dataset
• COVID-19 in Spain Dataset
• Detection of COVID-19 using Raman Spectroscopy

COVID-19 Impact Datasets

• COVID-19 impact on education
• Oxford University Dataset on COVID-19 Government Responses
• World Bank Indicators of Interest to the COVID-19 Outbreak
• Containment-measure-dataset
• ACAPS COVID-19: Government Measures Dataset
• COVID-19 Impact on Power Consumption in India
• HowsMyFlattening COVID-19 Dataset
• Community Mobility Dataset

IMAGE DATA

• COVID-19 Image data collections based upon X-ray and CT images of patients
• Stanford ML Group CheXpert - A Large Chest X-ray dataset
• COVID-19 Radiography Dataset
• Computed Tomography of Lungs Dataset for COVID19
• BIMCV - Medical Imaging Databank of the Valencia Region
• Radiopaedia COVID-19 CT Lung and Infection Segmentation Dataset
• EU COVID-19 Challenge - Synthetic CT Data for Deep Learning
• COVID-19 CT Lung and Infection Segmentation Benchmark Dataset
• MosMed COVID19 Data from Center of Diagnostics and Telemedicine
• COVID-19 CT Data from Wuhan Tongji Hospital
• Covid-19 Xray Dataset from V7 Labs

TEXT DATA

• IEEE dataset on COVID-19 Twitter data
• COVID-19 Open Reasearch Dataset Challenge (CORD-19)
• COVID-19 Multilanguage Tweets Dataset

LIST OF APIs

COVID-19 news APIs

COVID-19 case statistics by regions APIs

COVID-19 Other(Healthcare, testing, literature, contact tracing, etc) APIs

COVID-19 social media APIs

PROJECTS

Projects related to various datasets have also been added to their respective project's summary page under project sections.

Spread of Disease / Behaviour Change Simulation projects:

• COVID-19 API with Machine Learning prediction: The COVID-19 statistics collected from multiple sources and provided as an easy to use API. The data is then processed by Machine Learning algorithms to build disease spread prediction that is updated daily based on the recent data.

• PANDEMIK (Behavior Change and Mitigation Simulation): Pandemik is an end-to-end pipeline for simulating behavior change and mitigation effects on public health, economic, and psychological outcomes.

• COVID-19 CovidSim microsimulation: COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.

COVID-19 Simulation Projects with Impacts on Health, Economy:

• Aged Based Simulation of Health and Economic Effects of COVID-19: Simulation of complex dynamical systems using the individual states of its components (Economic, Aged, Demographics,etc.) to detect global behaviors that emerge due COVID-19. There is also a medium article on this topic by the authors.

• Macroeconomic Dynamics and Reallocation in an Epidemic: In this paper / project the authors argue that endogenous shifts in private consumption behavior across sectors of the economy can act as a potent mitigation mechanism during an epidemic or when the economy is re-opened after a temporary lockdown.

• Covid-19-indicator: Web based application to analyse the live cases of COVID-19 and is impact on economy.

Visual Analytics Projects

• British Columbia (BC) - Coronavirus Cases dashboard: The BC COVID-19 dashboard for the latest case counts and information on recoveries, deaths, hospitalizations, testing and more.

• US county level interactive map of Covid-19 cases (using Geopandas and Bokeh): The project creates a static and live/interactive html map (Click on the link!!!) using data from @nytimes that tracks the spread of Covid-19 by date and US counties. Please see @nytimes repository for information regarding the data and it's use.

• Coronavirus Visual Analytics: A visual analytic system for analyzing big data related to Conornavirus COVID-19 outbreak. The system aims to provide visual insights of big data for clinical researchers. The analytics include outbreak severity,airline impact and economic recovery. The live demo is the project can be found on this link.

Other Projects / Apps related to COVID-19

• BBC Data Unit - Coronavirus crowd funding pubs: Analysis of the COVID-19 on crowdfunding for Pubs using the BBC-data-units's dataset.

• Coronavirus CLI app: A nodejs based CLI app to provide latest COVID-19 stats across the globe.

• Corona Warn App Server: The goal of this project is to develop the official Corona-Warn-App for Germany based on the exposure notification API from Apple and Google.

Courses Related to COVID-19

• CS 472 Data science and AI for COVID-19 - (Stanford University).
• CMPT 456 - Information Retrieval and Web Search - (Simon Fraser University)
• CMPT 459 - Data Mining - (Simon Fraser University)
• Applied Data Science COVID-19 data analysis - (Udemy).
• COVID-19 Data Science Urban Epidemic Modelling in Python - (Udemy).
• COVID19 Data Analysis Using Python - (Coursera).
• Tableau Crash Course: Build and Share a COVID-19 Dashboard - (Udemy).

Contributions

• Data Science Reasearch Group - SFU
• Medical Image Analysis Lab - SFU