When using our software, you agree to cite our website url and related publications in all your work (publications, studies, oral presentations,...). In particular, you agree to cite our (Marée et al., Bioinformatics 2016) paper, and to use our logo when appropriate. See our license files for additional details.

• URL: http://www.cytomine.be/
• Logo: http://www.cytomine.be/logo/logo.png
• Scientific paper: Raphaël Marée, Loïc Rollus, Benjamin Stévens, Renaud Hoyoux, Gilles Louppe, Rémy Vandaele, Jean-Michel Begon, Philipp Kainz, Pierre Geurts and Louis Wehenkel. Collaborative analysis of multi-gigapixel imaging data using Cytomine, Bioinformatics, 2016.

Cytomine-dotslidetools

This tool converts dotslide files to tiff.

dotslide2tiff tools

java -jar lib/dotslideTool_good.jar -fi images/${directoryName}/fi -fp images/${directoryName}/fp -p images/${directoryName}/

java -jar lib/dotslideBuildTool_good.jar -f images/${directoryName}/fp.txt -io images/${directoryName}/${directoryName}

See import.groovy