@Article{marzahl2021exact,
title={EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control},
author={Marzahl, Christian and Aubreville, Marc and Bertram, Christof A. and Maier, Jennifer and Bergler, Christian and Kr{\"o}ger, Christine and Voigt, J{\"o}rn and Breininger, Katharina and Klopfleisch, Robert and Maier, Andreas},
journal={Scientific Reports},
year={2021},
month={Feb},
day={23},
volume={11},
number={1},
pages={4343},
abstract={In many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation. However, keeping track of these annotations to ensure a high-quality multi-purpose data set is a challenging and labour intensive task. We developed the open-source online platform EXACT (EXpert Algorithm Collaboration Tool) that enables the collaborative interdisciplinary analysis of images from different domains online and offline. EXACT supports multi-gigapixel medical whole slide images as well as image series with thousands of images. The software utilises a flexible plugin system that can be adapted to diverse applications such as counting mitotic figures with a screening mode, finding false annotations on a novel validation view, or using the latest deep learning image analysis technologies. This is combined with a version control system which makes it possible to keep track of changes in the data sets and, for example, to link the results of deep learning experiments to specific data set versions. EXACT is freely available and has already been successfully applied to a broad range of annotation tasks, including highly diverse applications like deep learning supported cytology scoring, interdisciplinary multi-centre whole slide image tumour annotation, and highly specialised whale sound spectroscopy clustering.},
issn={2045-2322},
doi={10.1038/s41598-021-83827-4},
url={https://doi.org/10.1038/s41598-021-83827-4}
}

git clone https://github.com/ChristianMarzahl/Exact.git

docker-compose -f docker-compose.prod.yml up -d --build
docker-compose -f docker-compose.prod.yml exec web python3 manage.py migrate --noinput 
docker-compose -f docker-compose.prod.yml exec web python3 manage.py createsuperuser
docker-compose -f docker-compose.prod.yml exec web python3 manage.py collectstatic --no-input --clear
docker-compose -f docker-compose.prod.yml logs -f

docker-compose -f docker-compose.yml up -d --build
docker-compose logs -f 

User: exact
Pw: exact

docker-compose -f docker-compose.prod.aws-db.yml up -d --build
docker-compose -f docker-compose.prod.aws-db.yml exec web python3 manage.py migrate --noinput
docker-compose -f docker-compose.prod.aws-db.yml exec web python3 manage.py createsuperuser
docker-compose -f docker-compose.prod.aws-db.yml exec web python3 manage.py collectstatic --no-input --clear
docker-compose -f docker-compose.prod.aws-db.yml logs -f

Invoke-Expression -Command (aws ecr get-login --no-include-email)

docker tag exact_nginx:latest **************.dkr.ecr.eu-central-1.amazonaws.com/exact_nginx:latest
docker tag exact_web:latest **************.dkr.ecr.eu-central-1.amazonaws.com/exact:latest

docker push **************.dkr.ecr.eu-central-1.amazonaws.com/exact_nginx:latest
docker push **************.dkr.ecr.eu-central-1.amazonaws.com/exact:latest

https://libvips.github.io/libvips/
[Ubuntu](https://github.com/libvips/libvips/wiki/Build-for-Ubuntu)

git clone https://github.com/ChristianMarzahl/Exact.git

pip3 install -r requirements.txt

cp exact/exact/settings.py.example exact/exact/settings.py

CREATE USER exact PASSWORD 'exact';
CREATE DATABASE exact WITH OWNER exact ENCODING UTF8;

[uwsgi]
socket = /tmp/exact.socket
chmod-socket = 666
chdir = /srv/exact/Exact/exact/
master = true
binary-path = /usr/bin/uwsgi
virtualenv = /srv/exact/virtualenv/exact
module = exact.wsgi
uid = exact
gid = exact
processes = 6
#async = 10
threads = 1
#logto = /var/log/exact.log
plugins = python3,logfile
logger = file:/var/log/exact.log

upstream exact {
    server web:8000;
}

server {

    listen 80;

    client_max_body_size 10000M;
    keepalive_timeout 65;

    proxy_connect_timeout       6000s;
    proxy_send_timeout          6000s;
    proxy_read_timeout          6000s;
    send_timeout                6000s;
    client_body_timeout     6000s;

    location / {
        proxy_pass http://exact;
        proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
        proxy_set_header Host $host;
        proxy_redirect off;
    }
	
	location /static/ {
        expires 1h;
        alias /home/app/web/static/;
    }
	
	
    location /media/ {
        expires 1h;
        alias /home/app/web/media/;
    }

}

pip install -U -r requirements.txt
python3 manage.py migrate

GET /api/v1/openapi

https://github.com/rsinger86/drf-flex-fields
https://django-filter.readthedocs.io/en/master/

$ curl -X POST -d '{"username": "exact","password": "top_secret"}' -H
'Content-Type: application/json'  http://127.0.0.1:8000/api/auth/token/login/

@inproceedings{imagetagger2018,
   author={Fiedler, Niklas and Bestmann, Marc and Hendrich, Norman},
   year={2018},
   title={Imagetagger: An Open Source Online Platform for Collaborative Image Labeling},
   booktitle={RoboCup 2018: Robot World Cup XXII},
   organization={Springer}
}