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Top 7 whole-slide-imaging open source projects

pyslide
Digital Pathology Whole Slide Image Analysis Toolbox
✭ 38
pythonTeXdeep-learningimage-analysispathologywhole-slide-imagingcomputational-pathology
SlideSeg
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
✭ 71
Jupyter Notebookpythonconvolutional-neural-networkssemantic-segmentationdigital-pathologywhole-slide-imaging
bluelight
a browser-based DICOM viewer
✭ 35
javascriptHTMLCSShtml5dicomdicomwebbluelightdicom-serverwhole-slide-imagingdicom-viewerorthancwsirtssdicom-web-viewerdicom-overlay
qupath-chcapi-extension
Extension to QuPath application adding support for reading from Google Cloud Healthcare API.
✭ 13
javadicomdicomwebwhole-slide-imaging
C2C
Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
✭ 30
pythonJupyter Notebookdeep-learningweakly-supervised-learningwhole-slide-imagingmultiple-instance-learninghistopathology
Cytomine-core
Cytomine-Core is the main web server implementing the Cytomine API
✭ 70
groovyjavacshellBatchfileDockerfilemachine-learningdigital-pathologywhole-slide-imagingcomputational-pathologycytomine
Exact
An open source online platform for collaborative image labeling of almost everything
✭ 47
version-controlannotationscollaborationwhole-slide-imagingalgorithm-aided
1-7 of 7 whole-slide-imaging projects