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Mutual labels: reproducible-research, genepattern
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
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Mutual labels: genomics, reproducible-research
CanvasxpressJavaScript VisualizationTools
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PHISTPhage-Host Interaction Search Tool
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Mutual labels: genomics
gawnGenome Annotation Without Nightmares
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biglya pileup library that embraces the huge
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Mutual labels: genomics
DriverPowerDriverPower
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Mutual labels: genomics
simuGsimuG: a general-purpose genome simulator
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Mutual labels: genomics
DRAMDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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Mutual labels: genomics
binderhub-deployDeploy a BinderHub from scratch on Microsoft Azure
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Mutual labels: reproducible-research
bac-genomics-scriptsCollection of scripts for bacterial genomics
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ck-analyticsCollective Knowledge repository with actions to unify the access to different predictive analytics engines (scipy, R, DNN) from software, command line and web-services via CK JSON API:
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Mutual labels: reproducible-research
mitymity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
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Mutual labels: genomics
biopython-coronavirusBiopython Jupyter Notebook tutorial to characterize a small genome
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Mutual labels: genomics
psmcImplementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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Mutual labels: genomics
LRSDAYLRSDAY: Long-read Sequencing Data Analysis for Yeasts
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Mutual labels: genomics
jupyter-guideGuide for Reproducible Research and Data Science in Jupyter Notebooks
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Mutual labels: reproducible-research
software-devCoding Standards for the USC Biostats group
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snp-sitesFinds SNP sites from a multi-FASTA alignment file
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