Top 133 reproducible-research open source projects

Package an R workspace and all dependencies as a Docker container

JavaScript VisualizationTools

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Future Gadget Laboratory

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

Live code in Pandoc Markdown

Generate custom Docker and Singularity images, and minimize existing containers

Avalanche: a End-to-End Library for Continual Learning.

🐳 Containerize R Markdown documents for continuous reproducibility

A Collection of Variational Autoencoders (VAE) in PyTorch.

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

An R package for data screening

Lightweight, Python library for fast and reproducible experimentation 🔬

project page for creating a guide to reproducible research

R interface to the Open Science Framework (OSF)

Collection of popular and reproducible image denoising works.

Everware is about re-useable science, it allows people to jump right in to your research code.

A curated list of reproducible research case studies, projects, tutorials, and media

FMA: A Dataset For Music Analysis

A DSL for data-driven computational pipelines

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

An R-focused pipeline toolkit for reproducibility and high-performance computing

A platform for end-to-end development of machine learning solutions in biomedical imaging

awesome open list of pointers about open science for software and computational science

An R package for storing and retrieving data.frames in git repositories.

R package to interface with OpenML

Statistical Analysis of RNA-Seq Tools

Express parametrable, composable and portable data pipelines

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

Example workflows for the drake R package

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Cookbook examples for the Insight Toolkit documented with Sphinx

Source code for the CERN Analysis Preservation portal

Website for NA-MIC Project Weeks

Curated set of transformers that make your work with steppy faster and more effective 🔭

Shared artifacts in the Collective Knowledge Format as a proof-of-concept to reproduce our recent Collective Mind- and Collective Knowledge-related papers

MEX Vocabulary: a lightweight machine learning interchange format

a research software; a fun way of storing files & folders on your local disk drive; tagging

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Scientific reports/literate programming for Julia

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

A research tool for the Iterated Prisoner's Dilemma

rrtools: Tools for Writing Reproducible Research in R

Presentation-Ready Data Summary and Analytic Result Tables

🚀 Build and manage real-life data science projects with ease!

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

Effortless method to record provenance in Python

Experiments for understanding disentanglement in VAE latent representations

Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Functional workflows

Function-oriented Make-like declarative workflows for R

An R package to create styled tables in multiple output formats, with a friendly, modern interface.

An R Pandoc Writer: Convert arbitrary R objects into markdown

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb