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All Projects → thanhleviet → ISfinder-sequences

thanhleviet / ISfinder-sequences

Licence: other
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

Labels

plasmidmgeprokkaisfinder

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Insertion Sequence (IS) database

Update:

  • 2020-Oct
  • 2019-09-25
  • 2018-07-25

Collected from ISfinder , so when you use this sequence compilation, please cite:

For ISfinder please cite: Siguier P. et al. (2006) ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34: D32-D36 (link pubmed) and the database URL (http://www-is.biotoul.fr).

For ISbrowser please cite: Kichenaradja P. et al. (2010) ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes. Nucleic Acids Res. 38: D62-D68 (link pubmed).`

For ISsaga please cite: Varani A. et al. (2011) ISsaga: an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomesGenome Biology 2011, 12:R30

Files

  • IS.csv: Summary of IS collected from ISfinder
  • IS.fna: DNA sequences (Description line: >(IS name)_(IS group)_(IS family))
  • IS.faa: AA sequences, (Description line: >(IS name) ~~~(IS name)_(IS group)_(IS family)_ORF~~~(IS function)~~~). This file is formated to run with Prokka
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