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Top 4 plasmid open source projects

Predict plasmids from uncorrected long read data

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python TeX Dockerfile bioinformatics research nanopore genomics pathogen bioinformatics-pipeline pacbio global-health kmer oxford-nanopore plasmid infectious-diseases long-reads uncorrected plasmidfinder

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

✭ 99

typescript javascript Gnuplot visualization reactjs synthetic-biology vector dna igem plasmid

Software for prediction of plasmid sequences in metagenomic assemblies

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python r shell perl tensorflow prediction classification fasta plasmid metagenomes contigs metagenome plasmid-sequences metagenome-assembly plasmids plasflow

ISfinder-sequences

Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

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plasmid mge prokka isfinder

1-4 of 4 plasmid projects