loinc2hpo

A Java library to map tests results from LOINC codes to
Human Phenotype Ontology. terms. For details, please see Zhang et al. (2012) Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. NPJ Digit Med. 2019;2:32.

LOINC2HPO annotation

The LOINC to HPO mapping file is available at the loinc2hpoAnnotation repository.

Using loinc2hpo

loinc2hpo is intended to be used as a software library. Selected functions are demonstrated in the CLI app.

documentation

Please refer to http://loinc2hpo.readthedocs.io/en/latest/.

spring framework app

We are developing a separate app that will specialize in one functionality of this app - converting FHIR observations into HPO terms. The new app will be coded with the Spring framework and we strive to achieve enterprise-level quality. Please refer to the app with the following link: https://github.com/OCTRI/fhir2hpo

funding

We gratefully acknowledge funding by NCATS (CD2H project, A NATIONAL CENTER FOR DIGITAL HEALTH INFORMATICS INNOVATION), 1U24TR002306