MOLGENIS
MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.
Developing your own
Generate your own in three steps:
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Clone the MOLGENIS generator and an empty distro:
git clone https://www.github.com/molgenis/molgenis.git git clone https://www.github.com/molgenis/molgenis_distro.git cd molgenis_distro
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Model what you want for your experiment in a simple XML file example db, example ui:
molgenis.properties molgenis_db.xml molgenis_ui.xml
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Run the MOLGENIS generator, after that you're able to use your web application. This depends per app, but in general:
ant -f build_[APP].xml clean-generate-compile-test ant -f build_[APP].xml run
MOLGENIS applications
Many molgenis applications have been developed, a not so short overview:
- xQTL Workbench for multi-level QTL mapping (project)
- Dystrophic Epidermolysis Bullosa (deb-central) mutation database (project, publication)
- eXtensible Genotype and Phenotype database (XGAP) (project, publication)
- Design of Genetical Genomics Experiments (designGG)] (project, publication)
- BBMRI-NL biobank catalague (project)
- MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] (project, demo)
- Pheno-OM Phenotype observation model (project, demo)
- Mouse Resource Browser (MRB) project] (project, publication)
- MOLGENIS as data wrapper in Taverna (publication)
- Animal observation database (AnimalDB) (project)
- Nordic GWAS control database (project, publication)
- GWAS Central curation tool (project)
- Finnish disease database (FINDIS) (project)
- Bacterial microarrays database (MOLGEN-IS) (publication)
- Human Metabolic Pathway Database (project, publication)
If you think your project should be listed (differently) please let us know.