noamross / Nyhackr Docker Talk
Slides, Code, and Links to Resources from "Docker for the User," delivered at nyhackr 2018-07-11
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Docker for the UseR
This repository contains resources from my talk, "Docker for the UseR," presented at the New York Open Statistical Programming Meetup on 2018-07-11.
- Slides (PDF)
- Video (YouTube, audio is kinda rough)
- Code for each of the examples are in the
ex-*/
directories.
Links to topics and resources dicussed in the talk (and more!)
- Docker documentation website
- ROpenSci Docker Tutorial
- An introduction to Docker for reproducible research, with examples from the R environment, paper by Carl Boettiger on arXiv.
- Reproducibility of computational workflows is automated using continuous analysis, Beaulieu-Jones & Greene (2017), ($Nature Biotechnology)
- R Packages for running Docker
-
The Rocker Project - Docker Containers for the R Environment
- Paper by Carl Boettiger and Dirk Eddelbuettel about the project in the R journal
- R packages for auto-generating Dockerfiles for projects
- containerit
- liftr for R Markdown Files
- rize for Shiny Apps
- dockerfiler for editing/modifying Dockerfiles
- Binder for (free!) hosting of interactive RStudio/Jupyter environments for public GitHub repos
- R Packages that call Docker containers
- R services that you might deploy with Docker
- Deploying Compute Jobs with Docker
- Using googleComputeEngineR
- With the future package on a cluster (see example code)
- The Singluarity Project as an alternative to Docker built for running big computer jobs on clusters/supercomputers.
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