human genomics pipelineA Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Stars: ✭ 19 (-54.76%)
Mutual labels: illumina
jgi-queryA simple command-line tool to download data from Joint Genome Institute databases
Stars: ✭ 38 (-9.52%)
Mutual labels: bioinformatics
wgs2ncbiToolkit for preparing genomes for submission to NCBI
Stars: ✭ 25 (-40.48%)
Mutual labels: bioinformatics
ngs-preprocessA pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Stars: ✭ 22 (-47.62%)
Mutual labels: illumina
nanoseqNanopore demultiplexing, QC and alignment pipeline
Stars: ✭ 82 (+95.24%)
Mutual labels: demultiplexing
ensembl-comparaThe Ensembl Compara Perl API and SQL schema
Stars: ✭ 43 (+2.38%)
Mutual labels: bioinformatics
clearml-server-helmClearML Server for Kubernetes Clusters Using Helm
Stars: ✭ 18 (-57.14%)
Mutual labels: experiment-manager
TeamTeriGenomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (-28.57%)
Mutual labels: bioinformatics
StrobeAlignAligns short reads using dynamic seed size with strobemers
Stars: ✭ 49 (+16.67%)
Mutual labels: illumina
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-59.52%)
Mutual labels: bioinformatics
deMLMaximum likelihood demultiplexing
Stars: ✭ 41 (-2.38%)
Mutual labels: demultiplexing
fqCommand line utility for manipulating Illumina-generated FastQ files.
Stars: ✭ 31 (-26.19%)
Mutual labels: illumina
Scaff10XPipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Stars: ✭ 21 (-50%)
Mutual labels: bioinformatics
CliqueSNVNo description or website provided.
Stars: ✭ 13 (-69.05%)
Mutual labels: illumina
PrimerMinerR mased batch sequence downloader, with primer development and in silico evaluation capabilities
Stars: ✭ 27 (-35.71%)
Mutual labels: bioinformatics
recountR package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Stars: ✭ 40 (-4.76%)
Mutual labels: illumina
faster lmm dA faster lmm for GWAS. Supports GPU backend.
Stars: ✭ 12 (-71.43%)
Mutual labels: bioinformatics
gnparserGNparser normalises scientific names and extracts their semantic elements.
Stars: ✭ 26 (-38.1%)
Mutual labels: bioinformatics
unimapA EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✭ 76 (+80.95%)
Mutual labels: bioinformatics
CANDOComputational Analysis of Novel Drug Opportunities
Stars: ✭ 27 (-35.71%)
Mutual labels: bioinformatics