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Top 11 illumina open source projects

RNAseq pipeline centered on Salmon

✭ 18

shell Jupyter Notebook r Common Workflow Language transcript ion illumina salmon gencode

Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.

✭ 22

C++perl shell Makefile awk nanopore pacbio scaffolding illumina genome-assembly hybrid-genome-assembly alignment-free-algorithm

A permissively licensed library designed to replace Illumina's Experiment Manager

✭ 42

python bioinformatics illumina demultiplexing experiment-manager samplesheet

Aligns short reads using dynamic seed size with strobemers

✭ 49

C++c CMake bioinformatics alignment illumina short-read-mapping strobemers

Command line utility for manipulating Illumina-generated FastQ files.

✭ 31

rust Dockerfile bioinformatics genomics next-generation-sequencing illumina fastq fastq-files

An accurate and ultra-fast hybrid genome assembler

✭ 81

perl nanopore pacbio hybrid illumina genome-assembler

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

✭ 22

Nextflow Dockerfile workflow bioinformatics pipeline reproducible-research ngs reproducible-science pacbio illumina nanopack trimgalore ngs-preprocess bax2bam porechop pacbio-ccs

No description or website provided.

✭ 13

java ngs haplotypes quasispecies pacbio illumina

human genomics pipeline

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

✭ 19

python shell CSS pipeline genomics exome-pipeline illumina nvidia-gpu cohort-analysis gatk4 snakemake-pipeline gatk-bestpractices nvidia-clara-parabricks

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

✭ 40

r Makefile count gene human rstats bioconductor rnaseq deseq2 illumina exon junction derfinder annotation-agnostic recount

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

✭ 22

python genomics genome ngs plants pacbio illumina genome-assembly read-mapping ont nanopore-sequencing genome-size-estimation

1-11 of 11 illumina projects