YosefLab / Scone
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SCONE
Single-Cell Overview of Normalized Expression data
SCONE (Single-Cell Overview of Normalized Expression), a package for single-cell RNA-seq data quality control (QC) and normalization. This data-driven framework uses summaries of expression data to assess the efficacy of normalization workflows.
Install from Bioconductor
We recommend installation of the package via bioconductor.
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("scone")
Note that SCONE is currently in Bioconductor devel and hence requires R-devel (>= 3.4).
Install from Github
Usually not recommended. SCONE is under active development. To download the development version of the package, use the devtools
package.
library(devtools)
install_github("YosefLab/scone")
Install for R 3.3
You can download the latest release of SCONE for R 3.3 here.
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