All Projects → SingleronBio → SCOPE-tools

SingleronBio / SCOPE-tools

Licence: Apache-2.0 license
Single-Cell Omics Preparation Entity Tools

Programming Languages

python
139335 projects - #7 most used programming language
HTML
75241 projects
Dockerfile
14818 projects

Projects that are alternatives of or similar to SCOPE-tools

Awesome Single Cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Stars: ✭ 1,937 (+13735.71%)
Mutual labels:  single-cell
NGS
Next-Gen Sequencing tools from the Horvath Lab
Stars: ✭ 30 (+114.29%)
Mutual labels:  single-cell
scMCA
Mouse cell atlas
Stars: ✭ 45 (+221.43%)
Mutual labels:  single-cell
CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
Stars: ✭ 33 (+135.71%)
Mutual labels:  single-cell
scAlign
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Stars: ✭ 32 (+128.57%)
Mutual labels:  single-cell
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
Stars: ✭ 62 (+342.86%)
Mutual labels:  single-cell
SPLiT-Seq demultiplexing
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
Stars: ✭ 20 (+42.86%)
Mutual labels:  single-cell
cellsnp-lite
Efficient genotyping bi-allelic SNPs on single cells
Stars: ✭ 47 (+235.71%)
Mutual labels:  single-cell
dyngen
Simulating single-cell data using gene regulatory networks 📠
Stars: ✭ 59 (+321.43%)
Mutual labels:  single-cell
kana
Single cell analysis in the browser
Stars: ✭ 81 (+478.57%)
Mutual labels:  single-cell
ExpressionMatrix2
Software for exploration of gene expression data from single-cell RNA sequencing.
Stars: ✭ 29 (+107.14%)
Mutual labels:  single-cell
SCope
Fast visualization tool for large-scale and high dimensional single-cell data
Stars: ✭ 62 (+342.86%)
Mutual labels:  single-cell
trVAE
Conditional out-of-distribution prediction
Stars: ✭ 47 (+235.71%)
Mutual labels:  single-cell
cardelino
Clone identification from single-cell data
Stars: ✭ 49 (+250%)
Mutual labels:  single-cell
anndata2ri
Convert between AnnData and SingleCellExperiment
Stars: ✭ 79 (+464.29%)
Mutual labels:  single-cell
scPower
Experimental design framework for scRNAseq population studies (eQTL and DE)
Stars: ✭ 19 (+35.71%)
Mutual labels:  single-cell
SCICoNE
Single-cell copy number calling and event history reconstruction.
Stars: ✭ 20 (+42.86%)
Mutual labels:  single-cell
CUT-RUNTools-2.0
CUT&RUN and CUT&Tag data processing and analysis
Stars: ✭ 36 (+157.14%)
Mutual labels:  single-cell
sinto
Tools for single-cell data processing
Stars: ✭ 74 (+428.57%)
Mutual labels:  single-cell
Nebulosa
R package to visualize gene expression data based on weighted kernel density estimation
Stars: ✭ 50 (+257.14%)
Mutual labels:  single-cell

Stars condaDownloads Version Docs Status Install License


SCOPE-tools - Single Cell Omics Preparation Entity Tools


SCOPE-tools是一套用于处理SCOPE (Single Cell Omics Preparation Entity) 海量单细胞测序技术产出数据的工具。原始的fastq数据,经过cellbarcode提取与校正,序列比对和基因定量后,得到单细胞的表达矩阵,用于后续进一步的分析。

阅读使用 文档

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].