Awesome Single CellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Stars: ✭ 1,937 (+13735.71%)
Mutual labels: single-cell
NGSNext-Gen Sequencing tools from the Horvath Lab
Stars: ✭ 30 (+114.29%)
Mutual labels: single-cell
scMCAMouse cell atlas
Stars: ✭ 45 (+221.43%)
Mutual labels: single-cell
CrossTalkeRR package to do the Ligand Receptor Analysis Visualization
Stars: ✭ 33 (+135.71%)
Mutual labels: single-cell
scAlignA deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Stars: ✭ 32 (+128.57%)
Mutual labels: single-cell
CITE-seq-CountA tool that allows to get UMI counts from a single cell protein assay
Stars: ✭ 62 (+342.86%)
Mutual labels: single-cell
SPLiT-Seq demultiplexingAn unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
Stars: ✭ 20 (+42.86%)
Mutual labels: single-cell
cellsnp-liteEfficient genotyping bi-allelic SNPs on single cells
Stars: ✭ 47 (+235.71%)
Mutual labels: single-cell
dyngenSimulating single-cell data using gene regulatory networks 📠
Stars: ✭ 59 (+321.43%)
Mutual labels: single-cell
kanaSingle cell analysis in the browser
Stars: ✭ 81 (+478.57%)
Mutual labels: single-cell
ExpressionMatrix2Software for exploration of gene expression data from single-cell RNA sequencing.
Stars: ✭ 29 (+107.14%)
Mutual labels: single-cell
SCopeFast visualization tool for large-scale and high dimensional single-cell data
Stars: ✭ 62 (+342.86%)
Mutual labels: single-cell
trVAEConditional out-of-distribution prediction
Stars: ✭ 47 (+235.71%)
Mutual labels: single-cell
cardelinoClone identification from single-cell data
Stars: ✭ 49 (+250%)
Mutual labels: single-cell
anndata2riConvert between AnnData and SingleCellExperiment
Stars: ✭ 79 (+464.29%)
Mutual labels: single-cell
scPowerExperimental design framework for scRNAseq population studies (eQTL and DE)
Stars: ✭ 19 (+35.71%)
Mutual labels: single-cell
SCICoNESingle-cell copy number calling and event history reconstruction.
Stars: ✭ 20 (+42.86%)
Mutual labels: single-cell
CUT-RUNTools-2.0CUT&RUN and CUT&Tag data processing and analysis
Stars: ✭ 36 (+157.14%)
Mutual labels: single-cell
sintoTools for single-cell data processing
Stars: ✭ 74 (+428.57%)
Mutual labels: single-cell
NebulosaR package to visualize gene expression data based on weighted kernel density estimation
Stars: ✭ 50 (+257.14%)
Mutual labels: single-cell