kallistobustoolskallisto | bustools workflow for pre-processing single-cell RNA-seq data
Stars: ✭ 79 (+163.33%)
Mutual labels: rna-seq, single-cell
alevin-fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Stars: ✭ 78 (+160%)
Mutual labels: rna-seq, single-cell
kanaSingle cell analysis in the browser
Stars: ✭ 81 (+170%)
Mutual labels: rna-seq, single-cell
velodynDynamical systems methods for RNA velocity analysis
Stars: ✭ 16 (-46.67%)
Mutual labels: rna-seq, single-cell
scCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Stars: ✭ 137 (+356.67%)
Mutual labels: rna-seq, single-cell
cellSNPPileup biallelic SNPs from single-cell and bulk RNA-seq data
Stars: ✭ 42 (+40%)
Mutual labels: rna-seq, single-cell
OrchestratingSingleCellAnalysis-releaseAn online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
Stars: ✭ 35 (+16.67%)
Mutual labels: rna-seq, single-cell
iDEADifferential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
Stars: ✭ 23 (-23.33%)
Mutual labels: rna-seq, single-cell
gene-oracleFeature extraction algorithm for genomic data
Stars: ✭ 13 (-56.67%)
Mutual labels: rna-seq
MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Stars: ✭ 24 (-20%)
Mutual labels: rna-seq
MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
Stars: ✭ 30 (+0%)
Mutual labels: rna-seq
CoNekTCoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
Stars: ✭ 17 (-43.33%)
Mutual labels: rna-seq
CellNetCellNet: network biology applied to stem cell engineering
Stars: ✭ 39 (+30%)
Mutual labels: rna-seq
pyrpipeReproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Stars: ✭ 53 (+76.67%)
Mutual labels: rna-seq
scATAC-proA comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
Stars: ✭ 63 (+110%)
Mutual labels: single-cell
tailseekerSoftware for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
Stars: ✭ 17 (-43.33%)
Mutual labels: rna-seq
scAlignA deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Stars: ✭ 32 (+6.67%)
Mutual labels: single-cell
ExpressionMatrix2Software for exploration of gene expression data from single-cell RNA sequencing.
Stars: ✭ 29 (-3.33%)
Mutual labels: single-cell
CellOCellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Stars: ✭ 34 (+13.33%)
Mutual labels: rna-seq
CrossTalkeRR package to do the Ligand Receptor Analysis Visualization
Stars: ✭ 33 (+10%)
Mutual labels: single-cell
