All Projects → philipturner → swift-colab

philipturner / swift-colab

Licence: MIT license
Swift kernel for Google Colaboratory

Programming Languages

swift
15916 projects
shell
77523 projects
C++
36643 projects - #6 most used programming language

Projects that are alternatives of or similar to swift-colab

picatrix
Picatrix is a library designed to help security analysts in a notebook environment, such as colab or jupyter.
Stars: ✭ 35 (-30%)
Mutual labels:  jupyter, colab
colab-badge-action
GitHub Action that generates "Open In Colab" Badges for you
Stars: ✭ 15 (-70%)
Mutual labels:  jupyter, colab
cornerstone widget
A jupyter widget for the cornerstone library to make showing flashy images with nice tools easier.
Stars: ✭ 25 (-50%)
Mutual labels:  jupyter
colour-notebooks
Colour - Jupyter Notebooks
Stars: ✭ 21 (-58%)
Mutual labels:  jupyter
callisto
A command line utility to create kernels in Jupyter from virtual environments.
Stars: ✭ 15 (-70%)
Mutual labels:  jupyter
itikz
Cell and line magic for PGF/TikZ-to-SVG rendering in Jupyter notebooks
Stars: ✭ 55 (+10%)
Mutual labels:  jupyter
ipython pytest
Pytest magic for IPython notebooks
Stars: ✭ 33 (-34%)
Mutual labels:  jupyter
wxyz
Some Experimental Widgets
Stars: ✭ 25 (-50%)
Mutual labels:  jupyter
ijava-binder
An IJava binder base for trying the Java Jupyter kernel on https://mybinder.org/
Stars: ✭ 28 (-44%)
Mutual labels:  jupyter
visualizing-geodata folium-bokeh-demo-
folium, bokeh, jupyter, python
Stars: ✭ 17 (-66%)
Mutual labels:  jupyter
py4chemoinformatics
Python for chemoinformatics
Stars: ✭ 78 (+56%)
Mutual labels:  jupyter
drawdata
Draw datasets from within Jupyter.
Stars: ✭ 500 (+900%)
Mutual labels:  jupyter
data-science-learning
📊 All of courses, assignments, exercises, mini-projects and books that I've done so far in the process of learning by myself Machine Learning and Data Science.
Stars: ✭ 32 (-36%)
Mutual labels:  colab
ipyp5
p5.js Jupyter Widget
Stars: ✭ 33 (-34%)
Mutual labels:  jupyter
mercury
Mercury - data visualize and discovery with Javascript, such as apache zeppelin and jupyter
Stars: ✭ 29 (-42%)
Mutual labels:  jupyter
nimbo
Run compute jobs on AWS as if you were running them locally.
Stars: ✭ 126 (+152%)
Mutual labels:  jupyter
pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Stars: ✭ 109 (+118%)
Mutual labels:  jupyter
Python-Course
🐍 This is the most complete course in Python, completely practical and all the lessons are explained with examples, so that they can be easily understood. 🍫
Stars: ✭ 18 (-64%)
Mutual labels:  jupyter
MiXLab
MiXLab is a mix of multiple amazing Colab Notebooks found on the internet such as rcloneLab, RLabClone, Torrent to Google Drive Downloader and some more.
Stars: ✭ 143 (+186%)
Mutual labels:  colab
jupyterlab-desktop
JupyterLab desktop application, based on Electron.
Stars: ✭ 1,950 (+3800%)
Mutual labels:  jupyter

Swift-Colab

In March 2021, Google ended built-in Swift support on Colaboratory as part of their evil plot attempt to archive Swift for TensorFlow (S4TF). Now that new contributors are working on S4TF, a Swift Colab kernel is essential for ensuring that TPU acceleration still works. This repository is the successor to google/swift-jupyter, rewritten entirely in Swift.

Swift-Colab is an accessible way to do programming with Swift. It runs in a browser, taking only 30 seconds to start up. It is perfect for programming on Chromebooks and tablets, which do not have the full functionality of a desktop. You can access a free NVIDIA GPU for machine learning and use the real C bindings for OpenCL - instead of Python wrappers. Most importantly, the new S4TF finally runs on Colab.

For an in-depth look at how and why this repository was created, check out the summary of its history.


This repository does not currently run local Jupyter notebooks, but a future release will support JupyterLab. In the meantime, liuliu/swift-jupyter provides an actively maintained local notebook experience.

Why use Swift-'Colab' for experiences outside of Colaboratory?

Since swift-jupyter went unmaintained, Swift-Colab became the dominant "source of truth" for Jupyter notebook support. It's well-maintained and receives a high volume of internet traffic. Some users have tried running install_swift.sh on personal computers, with limited success. People will probably continue doing this despite the existence of liuliu/swift-jupyter. Furthermore, Swift-Colab's maintainer has a motive for supporting JupyterLab (but not for supporting Docker*).

Local environments have faster CPUs than virtual machines, compiling Swift packages more quickly than Google Colaboratory. They can store data persistently, bypassing the bottleneck of Swift for TensorFlow's excessively long build time. Furthermore, they permit using your personal computer's GPU for machine learning (only with NVIDIA/CUDA an upcoming S4TF backend will support any Metal or OpenCL-capable GPU).

*This presents a security risk: virtual machines encapsulate their code and stop it from harming the user's computer. When running vanilla JupyterLab, an ill-formed notebook could delete important files - in absence of proper security measures. Swift-Colab will harness any available mechanisms for limiting a process's access to the file system, and clearly document how it uses them.

Docker does not provide access to the user's GPU, unless they have an NVIDIA GPU (nvidia-docker). The maintainer wishes to make GPU acceleration accessible to all users, not favoring one specific platform over all others. If Docker could utilize non-NVIDIA GPUs, it would be viable and preferred to JupyterLab.

Getting Started

Colab notebooks created directly from Google Drive are tailored for Python programming. When making a Swift notebook, copy the official template instead. It contains the commands listed below, which download and compile the Jupyter kernel. Run the first code cell and click Runtime > Restart runtime in the menu bar.

!curl "https://raw.githubusercontent.com/philipturner/swift-colab/release/latest/install_swift.sh" --output "install_swift.sh"
!bash "install_swift.sh" "5.6.2" #// Replace '5.6.2' with newest Swift version.
#// After this cell finishes, go to 'Runtime > Restart runtime'.

Tip: Colab measures how long you keep a notebook open without interacting with it. If you exceed the time limit of Colab's free tier, it may restart in Python mode. That means Swift code executes as if it's Python code. In that situation, repeat the process outlined above to return to Swift mode.

To automatically crash and restart the runtime, add the following line to the code cell. You can also restart the runtime with Cmd/Ctrl + M + ., so this is not in the template notebook.

import os; import sys; sys.stdout.flush(); os.kill(os.getpid(), 9)

When Google sponsored S4TF from 2018 - 2021, the Swift community created several Jupyter notebooks. To run these notebooks now, slightly modify them. Create a new cell at the top of each notebook, including the commands shown above*. No further changes are necessary because of Swift-Colab's backward-compatibility. If you experience a problem, please file an issue.

*For a more future-proof solution, fill that cell with only a comment directing the user to Swift-Colab's repository. Whoever runs the notebook will likely not update the Swift version passed into install_swift.sh. I recommend this approach for the fastai/swiftai notebooks and anything else that must be maintained indefinitely.

This repository contains a growing list of tutorials sourced from s4tf/s4tf-docs (formerly tensorflow/swift) and fastai/swiftai. Before following them, read through this README and familiarize yourself with the peculiarities of Swift-Colab.

Using Swift-Colab

Google Colab is like the Swift REPL, but it submits several lines of code at once. Create a new cell with Insert > Code cell and fill it with the first example below. Run it, and 64 appears in the output. No matter how many lines a cell has, only the last one's return value appears. To get around this restriction, use print(...) to display values.

Int.bitWidth
// Output: (you can include this comment in the cell; it doesn't count as the "last line")
// 64
Int.bitWidth
Int.bitWidth
// Output:
// 64
print(Int.bitWidth)
Int.bitWidth
// Output:
// 64
// 64

The Swift kernel has several powerful features, including magic commands and Google Drive integration. Unfortunately, they are not fully documented yet. The old swift-jupyter's usage instructions may be helpful in the meantime.

Installing Packages

To install a Swift package, type %install and a Swift 4.2-style package declaration. The declaration should appear between two single quotes. After that, enter the modules you want to compile. Before importing any module with a Swift import statement, execute its %install command. You can install packages in any cell, even after other Swift code has executed.

%install '.package(url: "https://github.com/pvieito/PythonKit", .branch("master"))' PythonKit

Upon restarting the runtime, remember to rerun the %install command for each package. This command tells the Swift interpreter that the package is ready to be imported. It runs much more quickly than the first time through, because Swift-Colab utilizes cached build products from the previous Jupyter session. Try testing this mechanism by redundantly importing the same package. Make sure both commands match character-for-character!

%install '.package(url: "https://github.com/pvieito/PythonKit", .branch("master"))' PythonKit
%install '.package(url: "https://github.com/pvieito/PythonKit", .branch("master"))' PythonKit

SwiftPlot Integration

To use IPython graphs or SwiftPlot plots, enter the magic commands shown below. Include EnableIPythonDisplay.swift after installing the Swift packages, because the file depends on both of them. SwiftPlot takes 23 seconds to compile, so you may skip its install command unless you intend to use it. However, you must restart the runtime if you change your mind.

%install '.package(url: "https://github.com/pvieito/PythonKit", .branch("master"))' PythonKit
%install '.package(url: "https://github.com/KarthikRIyer/swiftplot", .branch("master"))' SwiftPlot AGGRenderer
%include "EnableIPythonDisplay.swift"

EnableIPythonDisplay.swift injects the following code into the interpreter, gated under multiple import guards. The code samples here do not explicitly import these libraries, as doing so would be redundant. If you do not include EnableIPythonDisplay.swift, explicitly import them before running other Swift code.

import PythonKit
import SwiftPlot
import AGGRenderer

For tutorials on using the SwiftPlot API, check out KarthikRIyer/swiftplot.

Swift for TensorFlow Integration

S4TF has a quite complex build setup. The easiest way to use it is copying the S4TF test notebook into your Google Drive. To configure it manually, read the instructions below.

Swift for TensorFlow does not compile on Linux release toolchains, so select a Swift development toolchain. Visit swift.org/download and scroll to "Trunk Development (main)". Note the date next to "Ubuntu 18.04" - at the time of writing, July 20, 2022. At the top of your Colab notebook, the first code cell says "Replace 5.6.2 with newest Swift version." Delete the "5.6.2" after "install_swift.sh" and enter the snapshot's date in YYYY-MM-DD format.

!bash "install_swift.sh" "2022-07-20" #// Replace 5.6.2 with newest Swift version.

You can easily download trunk snapshots by pasting their date. For other toolchains, the entire URL must be present. The code below downloads the July 5, 2022 snapshot from Swift's release/5.7 branch. Do not enter it into the notebook; it is only here for reference.

!bash "install_swift.sh" "https://download.swift.org/swift-5.7-branch/ubuntu1804/swift-5.7-DEVELOPMENT-SNAPSHOT-2022-07-05-a/swift-5.7-DEVELOPMENT-SNAPSHOT-2022-07-05-a-ubuntu18.04.tar.gz" #// Replace 5.6.2 with newest Swift version.

Execute the installation script and go to Runtime > Restart runtime. Next, download the X10 binary created from tensorflow/tensorflow and the C++ code in s4tf/s4tf. Paste the commands below into a unique code cell, which you only run once. Do not add anything else to this cell.

%system curl "https://storage.googleapis.com/swift-tensorflow-artifacts/oneoff-builds/tensorflow-ubuntu1804-cuda11-x86.zip" --output "x10-binary.zip"
%system unzip "x10-binary.zip"
%system cp -r "/content/Library/tensorflow-2.4.0/usr/include/tensorflow" "/usr/include/tensorflow"

Top-of-tree S4TF is currently tested against TensorFlow 2.9, as shown in the S4TF build script. The script does not yet run on every platform and a major XLA bug exists, so I cannot host modern X10 binaries online. The previous command downloaded the last X10 binary that Google created, which uses TF 2.4. Using an outdated binary brings some caveats, as the raw TensorFlow bindings were recently updated for v2.9. As a rule of thumb, avoid the _Raw namespace.

Now, the real action begins. s4tf/s4tf takes 3 minutes to compile on Google Colab, which sounds worse than it is. Swift-Colab 2.0 made this a one-time cost, so the package rebuilds instantaneously after restarting the runtime. Grab a cup of coffee or read a Medium article while it compiles, and that's the only waiting you ever need to do. If you accidentally close the browser tab with S4TF loaded, salvage it with Runtime > Manage sessions.

To access your closed notebook, first open a new notebook. Runtime > Manage sessions shows a list of active Colab sessions. Click on the closed notebook's name, and it opens in a new browser tab.

Go to Insert > Code cell and paste the following commands. The SwiftPM flags -c release -Xswiftc -Onone are commented out. They shorten build time to 2 minutes, but require restarting the runtime twice because of a compiler bug. Consider using these flags if compile time becomes a serious bottleneck in your workflow.

%install-swiftpm-flags $clear
// %install-swiftpm-flags -c release -Xswiftc -Onone
%install-swiftpm-flags -Xlinker "-L/content/Library/tensorflow-2.4.0/usr/lib"
%install-swiftpm-flags -Xlinker "-rpath=/content/Library/tensorflow-2.4.0/usr/lib"
%install '.package(url: "https://github.com/s4tf/s4tf", .branch("main"))' TensorFlow

Finally, import Swift for TensorFlow into the interpreter.

import TensorFlow

Swift Tutorials

Tutorial notebooks do not include commands for installing Swift-Colab; you must add the commands described in Getting Started. They also depend on modules such as PythonKit and TensorFlow, which were previously part of custom S4TF toolchains. We now use stock toolchains, so download the packages as described in Installing Packages and Swift for TensorFlow Integration. For tutorials that involve automatic differentiation, either use Differentiation or download a development toolchain.

Multiple tutorial notebooks depend on Swift for TensorFlow. You must recompile the Swift package in each notebook, waiting 3 minutes each time. Save time by compiling S4TF in one Colab instance, then reusing it for multiple tutorials. To start, open up the Swift for TensorFlow test notebook. Append the commands below to the cell that compiles S4TF. When S4TF starts building, read the rest of these instructions.

%install-swiftpm-flags $clear
%install '.package(url: "https://github.com/pvieito/PythonKit", .branch("master"))' PythonKit
import _Differentiation // If using a development toolchain.

// If using a release toolchain.
// %install '.package(url: "https://github.com/philipturner/differentiation", .branch("main"))' _Differentiation
// import Differentiation

In another browser tab, open one of the tutorials. Click Edit > Select all cells in the menu bar. Every cell should turn blue. Press Cmd/Ctrl + C to copy the cells. Switch back to the original Colab notebook and click the last cell. Press Cmd/Ctrl + V. Every cell from the tutorial should appear in the notebook that is compiling S4TF.

When following a tutorial for the first time, run its cells one by one. To run all of them at once, click the first code cell of the tutorial. Then, go to Runtime > Run after. If you are lucky, the cells can be deleted with Edit > Undo insert X cells. Otherwise, select all cells, delete them, and paste the contents of the S4TF test notebook. After resetting the notebook, go to Runtime > Restart runtime. Rerun the cell that installs TensorFlow and PythonKit, which should take 4 seconds to execute. Proceed with the second tutorial.

In the table below, "Compatible Swift Versions" lists whether each notebook runs under the latest release or development toolchain.

  • Release = 5.6.2 Release
  • Development = July 20, 2022 Development Snapshot
Tutorials from Google Dependencies Compatible Swift Versions
A Swift Tour Release, Development
Protocol-Oriented Programming & Generics Release, Development
Python Interoperability[1] PythonKit, S4TF[2] Release, Development
Sharp Edges in Differentiability[3][4] Differentiation Release, Development
Model Training Walkthrough Differentiation, PythonKit, S4TF Development
Raw TensorFlow Operators Differentiation, S4TF Development
Introducing X10, an XLA-Based Backend[5] S4TF, S4TF Models n/a

1One cell fails because of ambiguous overloads for PythonObject.== and PythonObject.<. Work around this by explicitly casting the comparison result to Bool before printing.

2When using release toolchains, skip the cell that contains Tensor<Float>.

3Several cells fail because gradient(at:in) was renamed to gradient(at:of:). Fix the second argument label and rerun the failed cells.

4One cell fails because of the ambiguous line gradient(at: 2, 2, of: pow). Fix this by replacing either 2 with Double(2).

5This notebook depends on tensorflow/swift-models, which is now maintained at s4tf/models. The repository has not been tested recently. Also, compilation requires using %install-swiftpm-import to inject the TensorFlow module.

Tutorials from FastAI Dependencies Compatible Swift Versions
n/a S4TF n/a

The Swift community made the following tutorials without sponsorship from Google. These do not import S4TF, so close the common Colab instance that ran previous tutorials. Execute each tutorial below in its original notebook, which may be pre-configured for GPU acceleration. Click Runtime > Disconnect and delete runtime after completing each tutorial. Otherwise, Google may temporarily restrict your access to accelerators for overusing them.

For those looking to showcase Swift libraries in Jupyter/Colaboratory: contributions are welcome. Notebooks submitted in issues will be reviewed and accepted. DocC tutorials are also permissible; Swift-Colab's maintainer will either convert them into Jupyter notebooks or redirect users to the documentation website.

Community Tutorials Dependencies Compatible Swift Versions
Google Drive Integration6 PythonKit Release, Development
Simulating 3D Physics7 MuJoCo Release, Development
General-Purpose GPU with OpenCL7 SwiftOpenCL Release, Development

6Will be released as part of Swift-Colab v2.3.

7Still in development. Upon completion, the title will become a hyperlink.

Testing

These tests ensure that Swift-Colab runs on recent Swift toolchains. Some of them originate from unit tests in swift-jupyter, while others cover fixed bugs and third-party libraries. If any notebook fails or you have a suggestion for a new test, please open an issue.

To run a test, replace "5.6.2" in the first code cell with the newest Swift version. Run the installation commands, then go to Runtime > Restart runtime. Click on the second code cell and instruct Colab to execute every cell in the notebook (Runtime > Run after). Compare each cell's expected output with its actual output. If additional instructions appear at the top of the notebook, read them before running the test.

Test Passing Date of Last Test Run Swift Version
Swift Kernel Tests June 2022 5.6.2 Release
Own Kernel Tests June 2022 5.6.2 Release
Simple Notebook Tests June 2022 5.6.2 Release
SwiftPlot June 2022 5.6.2 Release
Swift for TensorFlow August 2022 August 9, 2022 Development Snapshot
Concurrency June 2022 5.6.2 Release
TPU Tests July 2022 July 5, 2022 v5.7 Development Snapshot
Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].