shiny-iatlasAn interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (+34.38%)
Mutual labels: systems-biology
stochpyStochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
Stars: ✭ 36 (+12.5%)
Mutual labels: systems-biology
chise.jsA web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Stars: ✭ 15 (-53.12%)
Mutual labels: systems-biology
findrFast Inference of Networks from Directed Regulations
Stars: ✭ 19 (-40.62%)
Mutual labels: systems-biology
yeast-GEMThe consensus GEM for Saccharomyces cerevisiae
Stars: ✭ 72 (+125%)
Mutual labels: systems-biology
CellMLToolkit.jlCellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
Stars: ✭ 50 (+56.25%)
Mutual labels: systems-biology
biojupiesAutomated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Stars: ✭ 96 (+200%)
Mutual labels: systems-biology
EscherConverterA standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
Stars: ✭ 14 (-56.25%)
Mutual labels: systems-biology
CNApyAn integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Stars: ✭ 27 (-15.62%)
Mutual labels: systems-biology
doctoral-thesis📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
Stars: ✭ 26 (-18.75%)
Mutual labels: systems-biology
pathway-mapperPathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Stars: ✭ 47 (+46.88%)
Mutual labels: systems-biology
smfsbDocumentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
Stars: ✭ 27 (-15.62%)
Mutual labels: systems-biology
parPEParameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Stars: ✭ 16 (-50%)
Mutual labels: systems-biology
pyPESTOpython Parameter EStimation TOolbox
Stars: ✭ 93 (+190.63%)
Mutual labels: systems-biology
cobrameA COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Stars: ✭ 30 (-6.25%)
Mutual labels: systems-biology
MomentClosure.jlTools to generate and study moment equations for any chemical reaction network using various moment closure approximations
Stars: ✭ 34 (+6.25%)
Mutual labels: systems-biology
dingoA python library for metabolic networks sampling and analysis
Stars: ✭ 29 (-9.37%)
Mutual labels: systems-biology
newtA web application to visualize and edit pathway models
Stars: ✭ 46 (+43.75%)
Mutual labels: systems-biology
ecell4 baseAn integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Stars: ✭ 61 (+90.63%)
Mutual labels: systems-biology
simon-frontend💹 SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform 💻
Stars: ✭ 114 (+256.25%)
Mutual labels: systems-biology