201 Open source projects that are alternatives of or similar to Awesome Reproducible Research

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Examples and demos for ReproZip

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Short course on reproducible science: what, why, how

rrtools: Tools for Writing Reproducible Research in R

Software Papers as Software Modules: Towards a Culture of Reusable Results

An R-focused pipeline toolkit for reproducibility and high-performance computing

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

Example workflows for the drake R package

Deploy a BinderHub from scratch on Microsoft Azure

Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.

Lightweight, Python library for fast and reproducible experimentation 🔬

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

🐳 Containerize R Markdown documents for continuous reproducibility

Package an R workspace and all dependencies as a Docker container

Presentation-Ready Data Summary and Analytic Result Tables

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

creating optimal conditions for reproducibility

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Workflow Description Language - Specification and Implementations

Source code for the CERN Analysis Preservation portal

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Open solution to the Google AI Object Detection Challenge 🍁

Reproducible Science: what, why, how

Papers with code for single cell related papers

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

project page for creating a guide to reproducible research

Everware is about re-useable science, it allows people to jump right in to your research code.

A minimal example data analysis project with the targets R package

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Future Gadget Laboratory

A set of tools for R that enhance reproducibility beyond package management

Function-oriented Make-like declarative workflows for R

Curated set of transformers that make your work with steppy faster and more effective 🔭

Pythonic functions for creating and enhancing Hydra applications

Short course on the targets R package

⛔ ARCHIVED ⛔

Data Analysis Workflows & Reproducibility Learning Resources

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Fully reproducible, open source scientific articles in LaTeX.

Coding Standards for the USC Biostats group

🔬 Empirical CLI

Future Gadget Machine

A DSL for data-driven computational pipelines

MEX Vocabulary: a lightweight machine learning interchange format

Reproduce research from paper "Predicting the direction of stock market prices using random forest"

a research software; a fun way of storing files & folders on your local disk drive; tagging

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

A toolkit for reproducible reinforcement learning research.

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

This is the development home of the workflow management system Snakemake. For general information, see

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Implementation of SCP-010.

Scientific reports/literate programming for Julia