431 Open source projects that are alternatives of or similar to axondeepseg

Deep and Machine Learning for Microscopy

My Implementation of the deeplab_v1 (known as deeplab large fov)

The Geometry and Image-Based Bioengineering add-On for MATLAB

Flood-Filling Networks for instance segmentation in 3d volumes.

TF2 implementation of PointNet for segmenting point clouds

Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.

No description or website provided.

The mutex watershed for image segmentation.

[deprecated] reference code for string segmentation using LSTM(tensorflow)

Camouflaged Object Detection, CVPR 2020 (Oral & Reported by the New Scientist Magazine)

Kaggle airbus ship detection challenge 21st solution

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

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DroneDeploy Machine Learning Segmentation Benchmark

Open Delmic Microscope Software

A curated list of awesome computational cryo-EM methods.

ETA: Extensible Toolkit for Analytics

Single-cell fluorescence microscopy data analysis

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A PyTorch implementation of PointRend: Image Segmentation as Rendering

GPU Accelerated TensorFlow Lite applications on Android NDK. Higher accuracy face detection, Age and gender estimation, Human pose estimation, Artistic style transfer

👉 CARLA resources such as tutorial, blog, code and etc https://github.com/carla-simulator/carla

Simple linear iterative clustering (SLIC) in a region of interest (ROI)

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

Web application for image labeling and segmentation

A sentence segmenter that actually works!

Kaggle | 14th place solution for TGS Salt Identification Challenge

Brain Segmentation on MRBrains18

Deep Occlusion-Aware Instance Segmentation with Overlapping BiLayers [CVPR 2021]

Skin lesion detection from dermoscopic images using Convolutional Neural Networks

Code and dataset for the IJCAI 2021 paper "Document-level Relation Extraction as Semantic Segmentation".

A pixel classification based multiplexed image segmentation pipeline

A Fast and Open Source Autonomous Perception System.

Chinese word segmentation in tensorflow 2.x

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

Road Segmentation in Satellite Aerial Images

AI-based pathology predicts origins for cancers of unknown primary - Nature

Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.

Fast and Accurate 3D PSF Computation for Fluorescence Microscopy

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

A convex 3D deconvolution algorithm for low photon count fluorescence imaging

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

TensorFlow implementation of ENet

Burmese (Myanmar) syllable level segmentation with regex.

A curated list of dedicated resources and applications

Official Python implementation of the 'Sparse deconvolution'-v0.3.0

This repo contains the code for our paper "A novel focal Tversky loss function and improved Attention U-Net for lesion segmentation" accepted at IEEE ISBI 2019.

A Clone version from Original SegCaps source code with enhancements on MS COCO dataset.

a generalist algorithm for cellular segmentation

The code for preparing the training data for crowd counting / segmentation algorithm.

Intensity-based_Lidar_Camera_Calibration

A collection of tools for painting super-resolution images

Tunable U-Net implementation in PyTorch

Sequential patch-based segmentation for medical image

Fast (aimed to "real time") Portrait Segmentation on mobile phone

BlindAssist iOS app

Python 3 library for analysis of neuroanatomical data

Urban building extraction in Daejeon region using Modified Residual U-Net (Modified ResUnet) and applying post-processing.

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation