LLSpyLattice light-sheet post-processing utility.
Stars: ✭ 19 (+18.75%)
Mutual labels: microscopy
simple sim fusion demoSimple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution
Stars: ✭ 13 (-18.75%)
Mutual labels: microscopy
brainregAutomated 3D brain registration with support for multiple species and atlases.
Stars: ✭ 73 (+356.25%)
Mutual labels: microscopy
GPimGaussian processes and Bayesian optimization for images and hyperspectral data
Stars: ✭ 29 (+81.25%)
Mutual labels: microscopy
NanoJ-FluidicsManual, source-code and binaries for the NanoJ-Fluidics project
Stars: ✭ 47 (+193.75%)
Mutual labels: microscopy
ThreeDeconv.jlA convex 3D deconvolution algorithm for low photon count fluorescence imaging
Stars: ✭ 28 (+75%)
Mutual labels: microscopy
cellfinderAutomated 3D cell detection and registration of whole-brain images
Stars: ✭ 122 (+662.5%)
Mutual labels: microscopy
segmentationCode for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
Stars: ✭ 38 (+137.5%)
Mutual labels: microscopy
remote refocusA scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/
Stars: ✭ 13 (-18.75%)
Mutual labels: microscopy
cucimNo description or website provided.
Stars: ✭ 218 (+1262.5%)
Mutual labels: microscopy
bg-atlasapiA lightweight python module to interact with atlases for systems neuroscience
Stars: ✭ 54 (+237.5%)
Mutual labels: microscopy
flikaAn interactive image processing program for biologists written in Python.
Stars: ✭ 20 (+25%)
Mutual labels: microscopy
ColiCoordsSingle-cell fluorescence microscopy data analysis
Stars: ✭ 22 (+37.5%)
Mutual labels: microscopy
atomaiDeep and Machine Learning for Microscopy
Stars: ✭ 77 (+381.25%)
Mutual labels: microscopy
ImSwitchImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Stars: ✭ 43 (+168.75%)
Mutual labels: microscopy
napari-aicsimageioMultiple file format reading directly into napari using pure Python
Stars: ✭ 18 (+12.5%)
Mutual labels: microscopy
DeconvolutionLab2Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
Stars: ✭ 29 (+81.25%)
Mutual labels: microscopy
sparse-deconv-pyOfficial Python implementation of the 'Sparse deconvolution'-v0.3.0
Stars: ✭ 18 (+12.5%)
Mutual labels: microscopy
picassoA collection of tools for painting super-resolution images
Stars: ✭ 77 (+381.25%)
Mutual labels: microscopy
MicroscPSF-PyFast and Accurate 3D PSF Computation for Fluorescence Microscopy
Stars: ✭ 25 (+56.25%)
Mutual labels: microscopy