2056 Open source projects that are alternatives of or similar to Bio4j

EliasDB a graph-based database.

Play detective on Reddit: Discover political disinformation campaigns, secret influencers and more

A graph database written in rust

A Persistent Embedded Graph Database for Python

Graphs for Everyone

TypeDB: a strongly-typed database

Native GraphQL Database with graph backend

🥑 ArangoDB is a native multi-model database with flexible data models for documents, graphs, and key-values. Build high performance applications using a convenient SQL-like query language or JavaScript extensions.

TigerGraph Ecosystem

Experiments with Neo4j & 3d-force-graph https://github.com/vasturiano/3d-force-graph

GeneWeb is an open source genealogy software with a web interface created by Daniel de Rauglaudre.

A React web application to query and share any PostgreSQL database.

OpenNARS for Research 3.0+

A curated list of resources for graph databases and graph computing tools

Sample projects using Material, Graph, and Algorithm.

🌈Scaffold genome sequence assemblies using linked read sequencing data

Eclipse JNoSQL is a framework which has the goal to help Java developers to create Jakarta EE applications with NoSQL.

A large-scale entity and relation database supporting aggregation of properties

🦔 Fast, lightweight & schema-less search backend. An alternative to Elasticsearch that runs on a few MBs of RAM.

An open-source graph database

Python Driver for ArangoDB with built-in validation

OrientDB is the most versatile DBMS supporting Graph, Document, Reactive, Full-Text and Geospatial models in one Multi-Model product. OrientDB can run distributed (Multi-Master), supports SQL, ACID Transactions, Full-Text indexing and Reactive Queries. OrientDB Community Edition is Open Source using a liberal Apache 2 license.

Scala wrapper for Apache TinkerPop 3 Graph DSL

基于自然语言理解与机器学习的聊天机器人，支持多用户并发及自定义多轮对话

🐣 locally query the ncbi taxonomy

Specification of the Cypher property graph query language

Graph is a semantic database that is used to create data-driven applications.

Parser and database to index the terpene profile of different strains of Cannabis from online databases

A curated list of Knowledge Graph related learning materials, databases, tools and other resources

Simple read-only comand-line interface to your Things 3 database

compacted de Bruijn graph construction in low memory

Open source graph database and document store. Designed for collaboratively building data-intensive applications and knowledge graphs.

JanusGraph: an open-source, distributed graph database

GraphJin - Build APIs in 5 minutes with GraphQL. An instant GraphQL to SQL compiler.

A graph database as a Redis module

Neo4j Movies Example with webpack-in-browser app using the neo4j-javascript-driver

Neo4j Object Graph Mapper for PHP

neo4j-client -- Neo4j Command Line Interface (CLI)

Neo4j Movies Example application with Flask backend using the neo4j-python-driver

An open source cybersecurity protocol for syncing decentralized graph data.

Apache TinkerPop - a graph computing framework

Graphik is a Backend as a Service implemented as an identity-aware document & graph database with support for gRPC and graphQL

Neo4j Movies Example application with SparkJava backend using the neo4j-java-driver

General purpose bitemporal database for SQL, Datalog & graph queries

The React state management library for write-heavy applications

SortMeRNA: next-generation sequence filtering and alignment tool

Bible databases as XML, JSON, SQL & SQLITE3 Database format for various languages. Developers can download it freely for their development works. Freely received, freely give.

UNMAINTAINED

[mirror] Go语言开发的基于DRH(Deep-Re-Hash)深度哈希分区算法的高性能高可用Key-Value嵌入式事务数据库。基于纯Go语言实现，具有优异的跨平台性，良好的高可用及文件IO复用设计，高效的底层数据库文件操作性能，支持原子操作、批量操作、事务操作、多表操作、多表事务、随机遍历等特性。

RadonDB is an open source, cloud-native MySQL database for building global, scalable cloud services

Built-in Snapshotting - backup and restore Storage Agnostic - you can use Irmin on top of your own storage layer Custom Datatypes - (de)serialization for custom data types, derivable via ppx_irmin Highly Portable - runs anywhere from Linux to web browsers and Xen unikernels Git Compatibility - irmin-git uses an on-disk format that can be inspected and modified using Git Dynamic Behavior - allows the users to define custom merge functions, use in-memory transactions (to keep track of reads as well as writes) and to define event-driven workflows using a notification mechanism

A vue wrapper for plotly.js chart library

AI Tool for querying natural language on tabular data.

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Graph and network visualization using tabular data in R.

Search and browse documents and data; find the people and companies you look for.

The MacGraph network. An attempt to get MACnets running on graph knowledge

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

A fully featured, data-driven database library for Clojure.

A fast, general purpose, graph based build and task execution utility.