2056 Open source projects that are alternatives of or similar to Bio4j

MyGene.info: A BioThings API for gene annotations

Search and browse documents and data; find the people and companies you look for.

Fastest golang Dijkstra path finder

Demonstrating best practices for bioinformatics command line tools

Demos and handouts for Talk Python's Data-Driven Web Apps with Pyramid and SQLAlchemy course

[DEPRECATED] Abstraction layer for Public Suffix List in PHP

Genomics Extension for SQLite

A decentralized, trusted, high performance, SQL database with blockchain features

The CSV to database command line loader

Oblecto is a media server, which streams media you already own, and is designed to be at the heart of your entertainment experience. It runs on your home server to index and analyze your media such as Movies and TV Shows and presents them in an interface tailored for your media consupmtion needs.

In-memory NoSQL database with ACID transactions, Raft consensus, and Redis API

The MacGraph network. An attempt to get MACnets running on graph knowledge

PoWA user interface

Awesome Procedures On Cypher for Neo4j - codenamed "apoc"                     If you like it, please ★ above ⇧            

Null friendly types

Simple and pragmatic migrations for Go applications.

Just some Dockerfiles I'm playing around with.

A simple SQL database

transforming your .proto files into .dot files (and .svg, .png if you happen to have graphviz installed)

WooriDB is a general purpose time serial database. It is schemaless, key-value storage and uses its own query syntax that is similar to SparQL.

Rust Client for the InfluxDB Time Series Database

A tidy SQL-based DB access library for Scala developers. This library naturally wraps JDBC APIs and provides you easy-to-use APIs.

🐴 The unreliable key-value store

Tri-Party Deep Network Representation

Distributed Prometheus time series database

DBI - The Perl 5 Database Interface

Directus is a real-time API and App dashboard for managing SQL database content. 🐰

An in-memory database of Python objects, searchable using quasi-SQL API

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Docker image for Oracle Database 12c

The Awksome Git Graph Generator

TableStore SDK for Golang

DeepWalk implementation in C++

Reactive graph database for re-frame

Distributed reliable key-value store for the most critical data of a distributed system

Supporting repo to go with book "Entity Framework Core in Action", second edition

This is the codebase for Entity Framework 6 (previously maintained at https://entityframework.codeplex.com). Entity Framework Core is maintained at https://github.com/dotnet/efcore.

A set of d3 based visualization components built for React

A framework for blazor which acts as an interface to IndexedDB

Automatic cleanup for the Rails db/structure.sql file (ActiveRecord/PostgreSQL)

Python Module for displaying flowgraphs using Pyside or PyQt.

A globally-distributed, eventually-consistent, 100% available key-value store ;)

Official Microsoft repository for SQL Server in Docker resources

GraphQuery is a query language and execution engine tied to any backend service.

Dramatically simplify full‑stack development

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

An optimized neo4j query resolver for Facebook's GraphQL

🎈 A build system designed to automate your WordPress development workflow.

Searches the directory of choice for interesting files. Such as database files and files with passwords stored on them

Database CRUD Application Built on Electron | MySQL, Postgres, SQLite

LAMBDA – the Local Aligner for Massive Biological DatA

A simple python lib to print data as ascii histograms

Immutable Ordered Key-Value Database Engine

Python module for average nucleotide identity analyses

Generate a SQLite file from MHW data

GridDB is a next-generation open source database that makes time series IoT and big data fast,and easy.

Antimicrobial Resistance Identification By Assembly

Generate the schema from an existing database.

Elixir driver for the Neo4j graph database server

A PHP Class that reads JSON file as a database. Use for sample DBs