312 Open source projects that are alternatives of or similar to bxtools

Simple & Efficient data access for Scala and Scala.js

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Fast and accurate sequence demultiplexing

RNASeq pipeline

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Double Sided Assembly Line Balancing with Genetic Algorithm (C#)

parallelized blat with multi-threads support

🚀 A sequencing simulator

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

AStarix: Fast and Optimal Sequence-to-Graph Aligner